View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15817_low_8 (Length: 218)

Name: NF15817_low_8
Description: NF15817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15817_low_8
NF15817_low_8
[»] chr4 (11 HSPs)
chr4 (14-200)||(5346572-5346758)
chr4 (18-200)||(5423896-5424078)
chr4 (18-200)||(5378648-5378830)
chr4 (19-158)||(5363192-5363331)
chr4 (18-200)||(5354303-5354485)
chr4 (19-200)||(5412415-5412596)
chr4 (19-201)||(5392965-5393147)
chr4 (19-135)||(5468188-5468304)
chr4 (111-200)||(5401306-5401395)
chr4 (19-200)||(5502169-5502350)
chr4 (19-89)||(5356534-5356604)
[»] chr5 (1 HSPs)
chr5 (18-198)||(20328826-20329006)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 5346572 - 5346758
Alignment:
Q  14 cagagatatgaagcatcttccaatcaccagtgctatttgggcatccgatagagccatgcaccttatttgaccttaaaaccatgattctcaatgttggaat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5346572 cagagatatgaagcatcttccaatcaccagtgctatttgggcatccgatagagccatgcagcttatttgaccttaaaaccatgattctcaatgttggaat 5346671  T
Q  114 tttactcaaaaaacatggaaatttgcctgttattgcattctttccaaggtttaagacctgtagttccttacaattgaccaaggattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5346672 tttactcaaaaaacatggaaatttgcctgttattgcattctttccaaggtttaagacctgtagttccttacaattgaccaatgattt 5346758  T

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Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 5423896 - 5424078
Alignment:
Q  18 gatatgaagcatcttccaatcaccagtgctatttgggcatccgatagagccatgcaccttatttgaccttaaaaccatgattctcaatgttggaatttta 117  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5423896 gatatgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctcaatgttggaatttta 5423995  T
Q  118 ctcaaaaaacatggaaatttgcctgttattgcattctttccaaggtttaagacctgtagttccttacaattgaccaaggattt 200  Q
    || | ||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  5423996 cttagaaaacatggaaatctgcctgttaatgcattctttccaaggtttaagacttgtagttccttacaattgatcaaggattt 5424078  T

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Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 5378830 - 5378648
Alignment:
Q  18 gatatgaagcatcttccaatcaccagtgctatttgggcatccgatagagccatgcaccttatttgaccttaaaaccatgattctcaatgttggaatttta 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  5378830 gatatgaagcatcttccaatcaccagtgctatttgggcatccaatagacccatgcagcttatttgaccttaaaatcatgattctcaatgttggaatttta 5378731  T
Q  118 ctcaaaaaacatggaaatttgcctgttattgcattctttccaaggtttaagacctgtagttccttacaattgaccaaggattt 200  Q
    ||||||||| |||||||| |||| |||| |||||||||||||||||| |  || |||||||||||||| ||||||||||||||    
T  5378730 ctcaaaaaatatggaaatctgccggttaatgcattctttccaaggttaataacttgtagttccttacagttgaccaaggattt 5378648  T

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Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 5363331 - 5363192
Alignment:
Q  19 atatgaagcatcttccaatcaccagtgctatttgggcatccgatagagccatgcaccttatttgaccttaaaaccatgattctcaatgttggaattttac 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | || || |  ||||||||||||||||||||||||||||| |||||||||||||    
T  5363331 atatgaagcatcttccaatcaccagtgctatttgggcatccaataaacccgtggaatttatttgaccttaaaaccatgattctcaaggttggaattttac 5363232  T
Q  119 tcaaaaaacatggaaatttgcctgttattgcattctttcc 158  Q
    |||| |||||||||| | | || |||| |||||| |||||    
T  5363231 tcaagaaacatggaattcttccagttagtgcattatttcc 5363192  T

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Target: chr4; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 5354485 - 5354303
Alignment:
Q  18 gatatgaagcatcttccaatcaccagtgctatttgggcatccgatagagccatgcaccttatttgaccttaaaaccatgattctcaatgttggaatttta 117  Q
    |||||||||||||||||||||||||  |||||| | ||||   ||||| ||||| | ||||||||||||||||||||| | ||| |  |  | ||||||     
T  5354485 gatatgaagcatcttccaatcaccaaagctattagagcatttaatagacccatggaacttatttgaccttaaaaccattactcttagggaggaaattttg 5354386  T
Q  118 ctcaaaaaacatggaaatttgcctgttattgcattctttccaaggtttaagacctgtagttccttacaattgaccaaggattt 200  Q
    |||||||||||||||||||| || |||| || ||||||||||||||| | ||| | |||||| || ||||||||||| |||||    
T  5354385 ctcaaaaaacatggaaattttccggttaatgaattctttccaaggttaaggacttctagttctttgcaattgaccaatgattt 5354303  T

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Target: chr4; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 5412596 - 5412415
Alignment:
Q  19 atatgaagcatcttccaatcaccagtgctatttgggcatccgatagagccatgcaccttatttgaccttaaaaccatgattctcaatgttgg-aatttta 117  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||| | | ||||| ||| ||     
T  5412596 atatgaagcatctcccaatcaccagtgctatttgggcatccaatagatccatgcatcttatttgaccttaaaatcatgattcgc-aggttggaaatattg 5412498  T
Q  118 ctcaaaaaacatggaaatttgcctgttattgcattctttccaaggtttaagacctgtagttccttacaattgaccaaggattt 200  Q
    || || |||||||||||| || |  |||    ||| ||||||||||||||||| || ||||  || ||||||||||| |||||    
T  5412497 cttaagaaacatggaaatctgtcacttaaaaaattatttccaaggtttaagacttgaagtttattgcaattgaccaaagattt 5412415  T

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Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 5393147 - 5392965
Alignment:
Q  19 atatgaagcatcttccaatcaccagtgctatttgggcatccgatagagccatgcaccttatttgaccttaaaaccatgattctcaatgttggaattttac 118  Q
    ||||||||||||||||| |||||||| ||| |||||||||| ||||| ||||| | |||||||||||||||||||||||||||||  || | ||| || |    
T  5393147 atatgaagcatcttccagtcaccagttctagttgggcatccaatagacccatggagcttatttgaccttaaaaccatgattctcagggtggaaatattgc 5393048  T
Q  119 tcaaaaaacatggaaatttgcctgttattgcattctttccaaggtttaagacctgtagttccttacaattgaccaaggatttg 201  Q
    | || |||||||||||| || |  |||    ||| ||||||||||||| ||| || ||||  || ||||||||||| ||||||    
T  5393047 ttaagaaacatggaaatctgtcacttaaaaaattatttccaaggtttaggacttgcagtttattgcaattgaccaaagatttg 5392965  T

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Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 5468188 - 5468304
Alignment:
Q  19 atatgaagcatcttccaatcaccagtgctatttgggcatccgatagagccatgcaccttatttgaccttaaaaccatgattctcaatgttggaattttac 118  Q
    ||||||||||||| ||||||||||||||||||||| ||| | ||||| ||||| | ||||||||||||||||| |||||||||||  || | ||| || |    
T  5468188 atatgaagcatctcccaatcaccagtgctatttggacattcaatagacccatggagcttatttgaccttaaaatcatgattctcagggtggaaatatttc 5468287  T
Q  119 tcaaaaaacatggaaat 135  Q
    |||| ||||||||||||    
T  5468288 tcaagaaacatggaaat 5468304  T

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Target: chr4; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 5401395 - 5401306
Alignment:
Q  111 aattttactcaaaaaacatggaaatttgcctgttattgcattctttccaaggtttaagacctgtagttccttacaattgaccaaggattt 200  Q
    |||||| |||| ||||||||||||| |||| |||| ||||||| ||||| |||| ||||| || ||||||||||||||||||||||||||    
T  5401395 aattttgctcagaaaacatggaaatctgcccgttaatgcattcattccagggttaaagacttgaagttccttacaattgaccaaggattt 5401306  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 5502350 - 5502169
Alignment:
Q  19 atatgaagcatcttccaatcaccagtgctatttgggcatccgatagagccatgcaccttatttgaccttaaaaccatgattctcaatgttgg-aatttta 117  Q
    ||||||||||| | ||||||||| ||| ||| |||||| || ||||| || || | |||||| ||||| ||||||||||| || |||| ||| ||| ||     
T  5502350 atatgaagcatatcccaatcacccgtgttatgtgggcacccaatagaaccgtggagcttattagacctcaaaaccatgatcct-aatggtggaaatgttt 5502252  T
Q  118 ctcaaaaaacatggaaatttgcctgttattgcattctttccaaggtttaagacctgtagttccttacaattgaccaaggattt 200  Q
    ||||| |||||||||||| || |   ||  ||||| || |||||||||| ||| ||||||| ||| ||||||||||| |||||    
T  5502251 ctcaagaaacatggaaatctgtcaactaaagcattgttcccaaggtttaggacttgtagtttcttgcaattgaccaaagattt 5502169  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 5356604 - 5356534
Alignment:
Q  19 atatgaagcatcttccaatcaccagtgctatttgggcatccgatagagccatgcaccttatttgaccttaa 89  Q
    ||||||||||||| ||||||||||||| |||||||||| || ||||| ||||| |  ||||| ||||||||    
T  5356604 atatgaagcatctcccaatcaccagtgttatttgggcacccaatagaaccatggagtttattagaccttaa 5356534  T

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Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 20329006 - 20328826
Alignment:
Q  18 gatatgaagcatcttccaatcaccagtgctatttgggcatccgatagagccatgcaccttatttgaccttaaaaccatgattctcaatgttggaatttta 117  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20329006 gatatgaagcatcttccaataaccagtgctatttgggcatctgatagacccatgcagcttatttgaccttaaaaccatgattctcaatgttggaatttta 20328907  T
Q  118 ctcaaaaaacatggaaatttgcctgttattgcattctttccaaggtttaagacctgtagttccttacaattgaccaaggat 198  Q
    || | ||||||||||||| ||||||||| |||||||||| ||||||||||||| ||||||||||||||||||| |||||||    
T  20328906 cttagaaaacatggaaatctgcctgttaatgcattcttttcaaggtttaagacttgtagttccttacaattgatcaaggat 20328826  T

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