View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15818_high_1 (Length: 712)
Name: NF15818_high_1
Description: NF15818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15818_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-129; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 361 - 676
Target Start/End: Original strand, 33830917 - 33831244
Alignment:
| Q |
361 |
agaggggtaagagagcaagggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
460 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33830917 |
agaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
33831016 |
T |
|
| Q |
461 |
tggcctgtagcatcaaactgaaaccaacttgtagaagactgtgtcttcttc--ttcacagcagctaccatatcttgtgggtcc--atccctccaattcaa |
556 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33831017 |
tggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttctattcacagcagctaccatatcttgtgggtccatatccctccaattcaa |
33831116 |
T |
|
| Q |
557 |
ctcaataaaagaacccttaaacccttgcgtatggttaaggtacgtgactc---------tgtcttcttatttatatagtgaatgtgtgtaactgggaaga |
647 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||||| |
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| T |
33831117 |
ctcaataaaagaacccttaaacccttgcgtatggttaaggtacgtgactcgtggagtgatagttatttatttatatagtgaatgtgtgt-actgggaaga |
33831215 |
T |
|
| Q |
648 |
ataagattgattttaagttgaagtttgtt |
676 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
33831216 |
ataagattgattttaagttgaagtttgtt |
33831244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 361 - 676
Target Start/End: Original strand, 33893080 - 33893407
Alignment:
| Q |
361 |
agaggggtaagagagcaagggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
460 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33893080 |
agaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
33893179 |
T |
|
| Q |
461 |
tggcctgtagcatcaaactgaaaccaacttgtagaagactgtgtcttcttc--ttcacagcagctaccatatcttgtgggtcc--atccctccaattcaa |
556 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
33893180 |
tggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttctattcacagcagctaccatatcttgtgggtccatatccctccaattcaa |
33893279 |
T |
|
| Q |
557 |
ctcaataaaagaacccttaaacccttgcgtatggttaaggtacgtgactc---------tgtcttcttatttatatagtgaatgtgtgtaactgggaaga |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||||| |
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| T |
33893280 |
ctcaataaaagaacccttaaacccttgcgtatggttaaggtacgtgactcgtggagtgatagttatttatttatatagtgaatgtgtgt-actgggaaga |
33893378 |
T |
|
| Q |
648 |
ataagattgattttaagttgaagtttgtt |
676 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
33893379 |
ataagattgattttaagttgaagtttgtt |
33893407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 33810405 - 33810616
Alignment:
| Q |
14 |
atactatacttgattatttaatgtgcgcatacgacacttgtagttacttttaagatgcaaatacaaagtgaggttatacagcaatacagtgaattttcat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
33810405 |
atactatacttgattatttaatgtgcgcatacgacacttgtagttacttttaagatgcaaatacaaagtgaggttatacagcaatacagtgaatttttat |
33810504 |
T |
|
| Q |
114 |
catactatgtcaagaaacacataaaatttcattcaccatcaatcaacaaattgacacattgaaagaaaagccaactaacctcgtcggcagtgataatcgc |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33810505 |
catactatgtcaagaaaaacataaaatttcattcaccatcaatccacaaattgacacattgaaagaaaagccaactaacctcatcggcagtgataatcgc |
33810604 |
T |
|
| Q |
214 |
cttgatatgctg |
225 |
Q |
| |
|
|||||||||||| |
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|
| T |
33810605 |
cttgatatgctg |
33810616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 33869874 - 33870085
Alignment:
| Q |
14 |
atactatacttgattatttaatgtgcgcatacgacacttgtagttacttttaagatgcaaatacaaagtgaggttatacagcaatacagtgaattttcat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
33869874 |
atactatacttgattatttaatgtgcgcatacgacacttgtagttacttttaagatgcaaatacaaagtgaggttatacagcaatacagtgaatttttat |
33869973 |
T |
|
| Q |
114 |
catactatgtcaagaaacacataaaatttcattcaccatcaatcaacaaattgacacattgaaagaaaagccaactaacctcgtcggcagtgataatcgc |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33869974 |
catactatgtcaagaaaaacataaaatttcattcaccatcaatccacaaattgacacattgaaagaaaagccaactaacctcatcggcagtgataatcgc |
33870073 |
T |
|
| Q |
214 |
cttgatatgctg |
225 |
Q |
| |
|
|||||||||||| |
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|
| T |
33870074 |
cttgatatgctg |
33870085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 306 - 517
Target Start/End: Original strand, 33810687 - 33810898
Alignment:
| Q |
306 |
tcatatgatatacctccaagttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810687 |
tcatatgatatacctccaagttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgc |
33810786 |
T |
|
| Q |
406 |
atcaatatgaaccctattcatgataacatacttgtccacatcatgaatccacccttggcctgtagcatcaaactgaaaccaacttgtagaagactgtgtc |
505 |
Q |
| |
|
|| ||| |||||||||| ||||||| ||||||||||||||||| | | |||||||||| ||| ||||||| || ||| ||| |||||||||||||| |
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|
| T |
33810787 |
attaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagacccttggccagtaccatcaaaagcaatccagcttctagaagactgtgtc |
33810886 |
T |
|
| Q |
506 |
ttcttcttcaca |
517 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33810887 |
ttcttcttcaca |
33810898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 306 - 517
Target Start/End: Original strand, 33870156 - 33870367
Alignment:
| Q |
306 |
tcatatgatatacctccaagttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33870156 |
tcatatgatatacctccaagttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgc |
33870255 |
T |
|
| Q |
406 |
atcaatatgaaccctattcatgataacatacttgtccacatcatgaatccacccttggcctgtagcatcaaactgaaaccaacttgtagaagactgtgtc |
505 |
Q |
| |
|
|| ||| |||||||||| ||||||| ||||||||||||||||| | | |||||||||| ||| ||||||| || ||| ||| |||||||||||||| |
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|
| T |
33870256 |
attaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagacccttggccagtaccatcaaaagcaatccagcttctagaagactgtgtc |
33870355 |
T |
|
| Q |
506 |
ttcttcttcaca |
517 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33870356 |
ttcttcttcaca |
33870367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 4e-52; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 308 - 448
Target Start/End: Complemental strand, 24409015 - 24408875
Alignment:
| Q |
308 |
atatgatatacctccaagttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgcat |
407 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24409015 |
atatgatatacctccaagttaagaataatagccttctcacgaccgagaataacataggggtaagagagcaagggatcaaggattctaagatcatgtgcat |
24408916 |
T |
|
| Q |
408 |
caatatgaaccctattcatgataacatacttgtccacatca |
448 |
Q |
| |
|
||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
24408915 |
taatctgaaccctatgcatgatagcatacttgtccacatca |
24408875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 308 - 448
Target Start/End: Original strand, 24410070 - 24410210
Alignment:
| Q |
308 |
atatgatatacctccaagttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgcat |
407 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24410070 |
atatgatatacctccaaattaagaataatagccttctcacgaccgagaataacagaggggtaagagagcaagggatcaaggattctaagatcacatgcat |
24410169 |
T |
|
| Q |
408 |
caatatgaaccctattcatgataacatacttgtccacatca |
448 |
Q |
| |
|
||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
24410170 |
taatctgaaccctatgcatgatagcatacttgtccacatca |
24410210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 24409179 - 24409104
Alignment:
| Q |
150 |
catcaatcaacaaattgacacattgaaagaaaagccaactaacctcgtcggcagtgataatcgccttgatatgctg |
225 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| |||||||||| || |||||||||||| ||||||||||||| |
|
|
| T |
24409179 |
catcaatcaacatattcacacattgaaagaaaaggtaactaacctcatcagcagtgataatcaccttgatatgctg |
24409104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 24409828 - 24409980
Alignment:
| Q |
72 |
aaatacaaagtgaggttatacagcaatacagtgaattttcatcatactatgtcaagaaacacataaaatttcattcac---catcaatcaacaaattgac |
168 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||| ||| || | ||||||||||| || | ||||| |||||| |||||||||||| ||| || |
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|
| T |
24409828 |
aaatgcaaagtgaggttaagcatcaatacagtgaattctcaccaaa--atgtcaagaaaaac--acaattttattcaccatcatcaatcaacatattcac |
24409923 |
T |
|
| Q |
169 |
acattgaaagaaaagccaactaacctcgtcggcagtgataatcgccttgatatgctg |
225 |
Q |
| |
|
||||||||||||||| |||||||||| || || ||||||||| |||||||||||| |
|
|
| T |
24409924 |
acattgaaagaaaaggtaactaacctcatcagcggtgataatcatcttgatatgctg |
24409980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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