View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15818_high_2 (Length: 214)

Name: NF15818_high_2
Description: NF15818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15818_high_2
NF15818_high_2
[»] chr1 (2 HSPs)
chr1 (92-204)||(3124531-3124643)
chr1 (92-130)||(3557314-3557352)
[»] chr7 (10 HSPs)
chr7 (18-94)||(4864424-4864500)
chr7 (40-94)||(4711592-4711646)
chr7 (40-94)||(4696710-4696764)
chr7 (39-94)||(4845532-4845587)
chr7 (40-94)||(4637378-4637432)
chr7 (40-94)||(4644216-4644270)
chr7 (40-94)||(4783355-4783409)
chr7 (40-94)||(4815784-4815838)
chr7 (40-70)||(4631451-4631481)
chr7 (40-94)||(4654017-4654071)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 3124531 - 3124643
Alignment:
Q  92 cttctccatccttcatttaacaaccaacattgttcacaagacaatctattaaacagcgcaattgtattttatacatacttattcagacaaactccgggcc 191  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3124531 cttctccatccttcatttaacaaccattattgttcacaagacaatctattaaacagcgcaattgtattttatacatacttattcagacaaactccgggcc 3124630  T
Q  192 actgctgatgatg 204  Q
    ||||| |||||||    
T  3124631 actgccgatgatg 3124643  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 3557352 - 3557314
Alignment:
Q  92 cttctccatccttcatttaacaaccaacattgttcacaa 130  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  3557352 cttctccatccttcatttaacaaccattattgttcacaa 3557314  T

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Target: chr7 (Bit Score: 77; Significance: 6e-36; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 4864424 - 4864500
Alignment:
Q  18 tgattgatttatattattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctt 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864424 tgattgatttatattattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctt 4864500  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 4711646 - 4711592
Alignment:
Q  40 ggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctt 94  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  4711646 ggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctt 4711592  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 4696764 - 4696710
Alignment:
Q  40 ggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctt 94  Q
    ||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||    
T  4696764 ggaatgaaagttatgtttaacttctcatttggtttggtttgaatgcaatattctt 4696710  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 4845587 - 4845532
Alignment:
Q  39 cggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctt 94  Q
    ||||| ||||||||||||||||||| |||||| |||||| ||||||||||||||||    
T  4845587 cggaaagaaagttatgtttagcttcccatttggtttgatctgaatgcaatattctt 4845532  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 4637378 - 4637432
Alignment:
Q  40 ggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctt 94  Q
    ||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||    
T  4637378 ggaatgaaagttatgtttaacttttcatttggtttgatttgtatgcaatattctt 4637432  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 4644216 - 4644270
Alignment:
Q  40 ggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctt 94  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||||    
T  4644216 ggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaatactctt 4644270  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 4783409 - 4783355
Alignment:
Q  40 ggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctt 94  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||| |||||||||    
T  4783409 ggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctt 4783355  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 4815838 - 4815784
Alignment:
Q  40 ggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctt 94  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||| |||||||||    
T  4815838 ggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctt 4815784  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 4631451 - 4631481
Alignment:
Q  40 ggaatgaaagttatgtttagcttctcatttg 70  Q
    |||||||||||||||||||||||||||||||    
T  4631451 ggaatgaaagttatgtttagcttctcatttg 4631481  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 4654017 - 4654071
Alignment:
Q  40 ggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctt 94  Q
    ||||||||||||||||||||||||| ||| | || || ||| |||||||||||||    
T  4654017 ggaatgaaagttatgtttagcttcttattcggttggacttggatgcaatattctt 4654071  T

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