View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15819_high_1 (Length: 576)
Name: NF15819_high_1
Description: NF15819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15819_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 3 - 205
Target Start/End: Complemental strand, 34870784 - 34870582
Alignment:
| Q |
3 |
aaaaattaatgagcatagaatcctgacacacgtggttgtgtagaatcattactattttcttaaattattatcagtgtttgtgtgtcgacatcaatgttgt |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34870784 |
aaaaattaatgagcataaaatcctgacacacgtggttgtgtagaatcactactattttctcaaattattatcagtgtttgtgtgtcgacatcaatgtcgt |
34870685 |
T |
|
| Q |
103 |
atccaatgtgagggatgcatagcacatgacatgatccctttacatgacttcctcttatacttgcatgtcgattttggtgaagaaattggtgaaatttgat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
34870684 |
atccaatgtgagggatgcatagcacatgacatgatccctttacatgacttcctcttatacttgcatgtggagtttggtgaagaaattggtgaaatttgat |
34870585 |
T |
|
| Q |
203 |
gga |
205 |
Q |
| |
|
||| |
|
|
| T |
34870584 |
gga |
34870582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 388 - 560
Target Start/End: Complemental strand, 34870335 - 34870167
Alignment:
| Q |
388 |
tagatcatacaattattgtagttttgttttatctatttagcttaactcgtttgaatttgaatgttactacataagttattgagttagttgttgataaata |
487 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
34870335 |
tagatcatgcaattattgtagttttgttttatctatttagcttaactcgtttgaatttgaatgttaatacataagttattgagtt----gttgataaata |
34870240 |
T |
|
| Q |
488 |
gactaataatagaaagttaaaaaattgtacctttgtccagttggcctcactatgtcaagataacataacatat |
560 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34870239 |
gactaataatagaaagtttaaaaattgtacctttgtccagttggcctcactatgtcaagataacataacatat |
34870167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 257 - 395
Target Start/End: Complemental strand, 34870530 - 34870385
Alignment:
| Q |
257 |
ttcacgttttggatttttagggagagaataaacccactaaaatggagaaaatgctgataaataactaaatatataatccaaaaa-------gagtcaaca |
349 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| |
|
|
| T |
34870530 |
ttcacgttttggatttttagagagagaataaacccactaaaatggagaaaatgctgataaataactaaatatataatccaaaaacaatgaggtgttaaca |
34870431 |
T |
|
| Q |
350 |
atttaaatccactaattacgaaatgatgaaaatgcccctagatcat |
395 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34870430 |
atttaaacccactaattacgaaatgatgaaaatgcccctaaatcat |
34870385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University