View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15819_low_2 (Length: 497)
Name: NF15819_low_2
Description: NF15819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15819_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 22 - 488
Target Start/End: Complemental strand, 43864649 - 43864184
Alignment:
| Q |
22 |
gttattatagatatggtgccgcgcacatagttgatagataattgagtttcttaacgatatcgtgaagagttcaatttcatgtttttgcatatgaaagagc |
121 |
Q |
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| T |
43864649 |
gttattatagatatggtgccgcgcacatagttgatagataattgagtttcttaacgatgtcgtgaagagttcaatttcatgtttttgcatatgaaagagc |
43864550 |
T |
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| Q |
122 |
aattgttgaaagagatccctcaaagaattttcccacctcctgatccatgacaccatgaatttaccccaaaaatattgtaagggttatatttagattgcaa |
221 |
Q |
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| T |
43864549 |
aattgttgaaagagatccctcaaagaattttcccacctcctgatccatgacaccttgaatttaccccaaaaatattgtaagggttatatttagattgcaa |
43864450 |
T |
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| Q |
222 |
gaaaccagcaacggccaagagtgaatttggtttggatgcatagtgtaattgtggatcaatatctaaaaattgctnnnnnnntaatttgaaaagaccaacc |
321 |
Q |
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| T |
43864449 |
gaaaccagcaacggccaagagtgaatttggtttggatgcatagtgtaattgtggatcaatatctaaaaattgctaaaaaa--aaattgaaaagaccaacc |
43864352 |
T |
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| Q |
322 |
tcatcaactttgattataagttaagagtcttccacatctttacatttgatacaatcacttcattcacgttgatttgacaacaacaaaataaatataatta |
421 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43864351 |
tcgtcaactttgattataagttaagagtcttccacatctttacatttgatacaatcacttcattcatgttgatttgacaacaacaaaataaatataatta |
43864252 |
T |
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| Q |
422 |
taagtttatttttgaggcactgacctgctannnnnnngtcaaatcgaca-cgattaaatcatcatttc |
488 |
Q |
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||| ||||||||||||| |||||||||||| |||||||||||| ||||||| |||||||||| |
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| T |
43864251 |
taaatttatttttgaggtactgacctgctatttttttgtcaaatcgacaccgattaagtcatcatttc |
43864184 |
T |
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