View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15819_low_4 (Length: 366)
Name: NF15819_low_4
Description: NF15819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15819_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 6417694 - 6417497
Alignment:
| Q |
1 |
cctcctaacttggtttcaactcactgnnnnnnnn--cttccagaacaaggcaccaaacaagtatcatgcaaacttttcaaccccaaaaaggaaacagaat |
98 |
Q |
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| T |
6417694 |
cctcctaacttggtttcaactcactgtttttttttccttccagaacaaggcaccaaacaagtatcatgcaaacttttcaaccccaaaaaggaaacagaat |
6417595 |
T |
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| Q |
99 |
gcagcacaaggaagttgatgttaggaagaggaatatgaatgaaaggcaacaaatcattgccaaaattttcgaggttgttgatgaagataatgaaaagc |
196 |
Q |
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| T |
6417594 |
gtagcacaaggaagttgatgttaggaacaggaatatgaatgaaaggcaacaaatcattgccaaaattttcaaggttgttgatgaagataatgaaaagc |
6417497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 197 - 305
Target Start/End: Complemental strand, 6417443 - 6417335
Alignment:
| Q |
197 |
ttgtaggaatttttcaactaaaattagtattcgactaccttgcaaaagtcctactaagattagatctgtggagaatttgaagggcaaaaatcaatttgaa |
296 |
Q |
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| T |
6417443 |
ttgtaggaatttttcaactaaaattagtattcgactaccttgcaaaagtcctactaagattagatctgtggagaatttgaggggcaaaaatcaatttgaa |
6417344 |
T |
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| Q |
297 |
agtatgcaa |
305 |
Q |
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| T |
6417343 |
agtatgcaa |
6417335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 4494329 - 4494421
Alignment:
| Q |
103 |
cacaaggaagttgatgttaggaagaggaatatgaatgaaaggcaacaaatcattgccaaaattttcgaggttgttgatgaagataatgaaaag |
195 |
Q |
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| T |
4494329 |
cacaaggaagttgatgttaccaaattggatatgaatgaaagacaacaaattattgacaaaattttcaaggttgctgaagaagataatgaaaag |
4494421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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