View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15819_low_5 (Length: 327)
Name: NF15819_low_5
Description: NF15819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15819_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 3377278 - 3377569
Alignment:
| Q |
17 |
agaatattgctatgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcatatcaagcgccaccattagtca |
116 |
Q |
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| T |
3377278 |
agaatattgctatgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcatatcaagtgccaccattagtca |
3377377 |
T |
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| Q |
117 |
gcctcaatcgtctgaaaaattatccacatatgaggtgaagcatttctatgatctgatggtagtattaatggtatcaattttcctaattcaatctattaat |
216 |
Q |
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| T |
3377378 |
gcctcaatcggcggaaaaattgtcaacatatgaggtgaagcatttctataatctgatagtagtattaatggtatcagttttcctaattcaatctactgat |
3377477 |
T |
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| Q |
217 |
atggagtttaggttatatagcttgtattcaaatttcgtttgcctgtttttatgtgtttctttaaataatgtaaattgaatttcagggtaaat |
308 |
Q |
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| T |
3377478 |
atggagtttaggttaaatagcttgtattcaaatttcatttgcctgtttttatgtgtttctttaaataatgtaaattgaatttcagggtaaat |
3377569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 3372420 - 3372710
Alignment:
| Q |
17 |
agaatattgctatgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcatatcaagcgccaccattagtca |
116 |
Q |
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| T |
3372420 |
agaatgttactatgaaggtaatgtcatcgtgtcggaaagaaccagaagctatatgcattctatctgcaattggagtcatatcaagcgcaaccattagtca |
3372519 |
T |
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| Q |
117 |
gcctcaatcgtctgaaaaattatccacatatgaggtgaagcatttctatgatctgatggtagtattaatggtatcaattttcctaattcaatctattaat |
216 |
Q |
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| T |
3372520 |
gcctcactcgtctgaaaaattatccacatatgaggtgcagcatttctgtaatc-gatagtaatattaatagcttcacttttcctaattcaatatactaaa |
3372618 |
T |
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| Q |
217 |
atggagtttaggttatatagcttgtattcaaatttcgtttgcctgtttttatgtgtttctttaaataatgtaaattgaatttcagggtaaat |
308 |
Q |
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| T |
3372619 |
atggagttaacattatatagtttgtattcatatgttgtttgcctattttgatgtgtttctttaaataatgtaaattgaatttcagggtaaat |
3372710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 3402611 - 3402742
Alignment:
| Q |
26 |
ctatgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcatatcaagcgccaccattagtcagcctcaatc |
125 |
Q |
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| T |
3402611 |
ctatgaagataatgtcattttgtcagcaaggaccagaagctatatgcattctatatgtaaatggagtcatatcaaaagtcgtcattagtcgacctcaatc |
3402710 |
T |
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| Q |
126 |
gtctgaaaaattatccacatatgaggtgaagc |
157 |
Q |
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| T |
3402711 |
gtctcgaacattattcacatatgaggtgaagc |
3402742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 63 - 161
Target Start/End: Original strand, 3374542 - 3374640
Alignment:
| Q |
63 |
agctatatgcattctatctgcaaatggagtcatatcaagcgccaccattagtcagcctcaatcgtctgaaaaattatccacatatgaggtgaagcattt |
161 |
Q |
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| T |
3374542 |
agctataagcatcctatctgcaaatggagtcgcatcaagagccaccattaatcggcctcaagcatctggaacattctacacatatgaggtgaagcattt |
3374640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 3374736 - 3374773
Alignment:
| Q |
268 |
tgtgtttctttaaataatgtaaattgaatttcagggta |
305 |
Q |
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| T |
3374736 |
tgtgtttctttcaataatgcaaattgaatttcagggta |
3374773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 42205929 - 42205997
Alignment:
| Q |
28 |
atgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcata |
96 |
Q |
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| T |
42205929 |
atgaaggtaatttcattttctcagcaaggacctcgagctgtatgcattctttcagcaaatggtgtcata |
42205997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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