View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15819_low_7 (Length: 218)
Name: NF15819_low_7
Description: NF15819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15819_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 44563069 - 44563252
Alignment:
| Q |
18 |
cctgcgagacttctcatattctcaggaaactgtttgtagtaaaattcaacttgtccaaccaaagtaaatgcatcagaaaatcctgctagtgctaactgag |
117 |
Q |
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| T |
44563069 |
cctgcaagacttctcatattctcaggaaactgtttgtagtaaaattcaacttgtccaaccaaagtaaatgcatcagaaaatcctgctagtgctaactgag |
44563168 |
T |
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| Q |
118 |
gaattaaccacattcccgacatggaagaaatcgcaccatttctcggttcaaatcctataggattattaatagccatggtccttc |
201 |
Q |
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| T |
44563169 |
gaattaaccacattcccgacatggaagaaatcgcaccatttctcggttcaaatcctataggattattaatagccatggtccttc |
44563252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 44541713 - 44541758
Alignment:
| Q |
31 |
tcatattctcaggaaactgtttgtagtaaaattcaacttgtccaac |
76 |
Q |
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| T |
44541713 |
tcatattctcaggaaactgtttatagtaaaattcaatttgtccaac |
44541758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 25289333 - 25289395
Alignment:
| Q |
18 |
cctgcgagacttctcatattctcaggaaactgtttgtagtaaaattcaacttgtccaaccaaa |
80 |
Q |
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| T |
25289333 |
cctgcaagaattctcatatactcaggaaacggtttgtagtaaaattcaacttatccaaccaaa |
25289395 |
T |
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