View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1581_high_4 (Length: 233)

Name: NF1581_high_4
Description: NF1581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1581_high_4
NF1581_high_4
[»] chr8 (19 HSPs)
chr8 (10-233)||(19410723-19410946)
chr8 (10-233)||(19457742-19457965)
chr8 (10-233)||(19523113-19523336)
chr8 (10-233)||(19469478-19469701)
chr8 (10-233)||(19540402-19540625)
chr8 (10-233)||(19592073-19592296)
chr8 (58-233)||(19376560-19376735)
chr8 (10-233)||(19345112-19345335)
chr8 (58-233)||(19404691-19404866)
chr8 (10-225)||(19504008-19504223)
chr8 (81-233)||(19468613-19468765)
chr8 (81-233)||(19555534-19555686)
chr8 (60-233)||(19390526-19390699)
chr8 (56-233)||(19355416-19355593)
chr8 (65-228)||(19172821-19172984)
chr8 (60-233)||(19337396-19337569)
chr8 (65-228)||(19287662-19287825)
chr8 (90-223)||(19370913-19371046)
chr8 (90-223)||(19341133-19341266)
[»] chr1 (1 HSPs)
chr1 (23-233)||(36314615-36314825)
[»] chr6 (1 HSPs)
chr6 (87-225)||(19543017-19543155)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 19410946 - 19410723
Alignment:
Q  10 catcatcaccttctaacttccccttcgaggatagttcccattgtgcaaaattcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19410946 catcatcacctactaacttccccttcgaggatagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 19410847  T
Q  110 aataatgtactgatacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 209  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19410846 aataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 19410747  T
Q  210 ttgatgttcaattcaccttgtttt 233  Q
    ||||||||||||||||||||||||    
T  19410746 ttgatgttcaattcaccttgtttt 19410723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 19457965 - 19457742
Alignment:
Q  10 catcatcaccttctaacttccccttcgaggatagttcccattgtgcaaaattcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19457965 catcatcacctactaacttccccttcgaggatagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 19457866  T
Q  110 aataatgtactgatacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 209  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19457865 aataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 19457766  T
Q  210 ttgatgttcaattcaccttgtttt 233  Q
    ||||||||||||||||||||||||    
T  19457765 ttgatgttcaattcaccttgtttt 19457742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 19523113 - 19523336
Alignment:
Q  10 catcatcaccttctaacttccccttcgaggatagttcccattgtgcaaaattcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19523113 catcatcacctactaacttccccttcgaggatagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 19523212  T
Q  110 aataatgtactgatacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 209  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19523213 aataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 19523312  T
Q  210 ttgatgttcaattcaccttgtttt 233  Q
    ||||||||||||||||||||||||    
T  19523313 ttgatgttcaattcaccttgtttt 19523336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 19469478 - 19469701
Alignment:
Q  10 catcatcaccttctaacttccccttcgaggatagttcccattgtgcaaaattcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 109  Q
    ||||||||||| ||||| |||| ||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19469478 catcatcacctactaacctccctttcgagattagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 19469577  T
Q  110 aataatgtactgatacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19469578 aataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 19469677  T
Q  210 ttgatgttcaattcaccttgtttt 233  Q
    |||||||||||||| |||| ||||    
T  19469678 ttgatgttcaattctccttctttt 19469701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 19540402 - 19540625
Alignment:
Q  10 catcatcaccttctaacttccccttcgaggatagttcccattgtgcaaaattcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 109  Q
    ||||||||||| ||||| |||| ||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19540402 catcatcacctactaacctccctttcgagattagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 19540501  T
Q  110 aataatgtactgatacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19540502 aataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 19540601  T
Q  210 ttgatgttcaattcaccttgtttt 233  Q
    |||||||||||||| |||| ||||    
T  19540602 ttgatgttcaattctccttctttt 19540625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 19592296 - 19592073
Alignment:
Q  10 catcatcaccttctaacttccccttcgaggatagttcccattgtgcaaaattcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 109  Q
    ||||||||||| ||||| |||| ||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19592296 catcatcacctactaacctccctttcgagattagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 19592197  T
Q  110 aataatgtactgatacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19592196 aataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 19592097  T
Q  210 ttgatgttcaattcaccttgtttt 233  Q
    |||||||||||||| |||| ||||    
T  19592096 ttgatgttcaattctccttctttt 19592073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 19376735 - 19376560
Alignment:
Q  58 aattcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggctggaatattctcgaa 157  Q
    |||||| |||||||| ||| ||  | || |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||    
T  19376735 aattccgatctttaatttcaaaactaaaggaatcttcatccttgttagagacaatgatgtaccgatacatattttgaacattggccggaatattctcgaa 19376636  T
Q  158 taatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaattcaccttgtttt 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19376635 taatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcagttcaccttgtttt 19376560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 19345335 - 19345112
Alignment:
Q  10 catcatcaccttctaacttccccttcgaggatagttcccattgtgcaaaattcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 109  Q
    |||||| |||| ||||| |||| ||||||| ||||| |||| ||||||| |||||||||||||||||||| | |||||||||||||| ||||||||||||    
T  19345335 catcatgacctactaacctcccgttcgaggttagttgccatcgtgcaaacttcccatctttaacttcgaaagcgaaagaatcttcattcttgttagagac 19345236  T
Q  110 aataatgtactgatacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 209  Q
    |||||||||||||||  ||  |||||| || |  ||||| |||||||||| ||||||||| |||||||||||||||||||||||| || |||||||||||    
T  19345235 aataatgtactgatatatacgttgaactttcgtgggaatgttctcgaatattccattgctattaagttttccgcttttccaatacgctatgccgcttttc 19345136  T
Q  210 ttgatgttcaattcaccttgtttt 233  Q
    ||||||||||||||||||| ||||    
T  19345135 ttgatgttcaattcaccttctttt 19345112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 19404866 - 19404691
Alignment:
Q  58 aattcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggctggaatattctcgaa 157  Q
    |||||| |||||| | || ||| ||||||||||||||||||||||||||||||||| |||| |||||| || ||||||||||||| ||||||||||||||    
T  19404866 aattccgatctttgattttgaaagtgaaagaatcttcatccttgttagagacaatagtgtattgatacatagtttgaacattggccggaatattctcgaa 19404767  T
Q  158 taatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaattcaccttgtttt 233  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  19404766 taatccatcgcttttaagttttccgcttttccaatacactttgcctcttttcttgatgttcagttcaccttgtttt 19404691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 19504008 - 19504223
Alignment:
Q  10 catcatcaccttctaacttccccttcgaggatagttcccattgtgcaaaattcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagac 109  Q
    |||||| |||| ||||| |||||||||||| ||||| |||| ||||||| |||||||||||||||||||| | |||||||||||||| ||||||||||||    
T  19504008 catcatgacctactaacctccccttcgaggttagttgccatcgtgcaaacttcccatctttaacttcgaaagcgaaagaatcttcattcttgttagagac 19504107  T
Q  110 aataatgtactgatacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttc 209  Q
    |||||||||||||||  ||  |||||| || |  ||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19504108 aataatgtactgatatatacgttgaacttttgtgggaatgttctcgaatattccattgcttttaagttttccgcttttccaatgcactttgccgcttttc 19504207  T
Q  210 ttgatgttcaattcac 225  Q
     | |||||||||||||    
T  19504208 cttatgttcaattcac 19504223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 19468613 - 19468765
Alignment:
Q  81 gtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttc 180  Q
    |||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||||  | |||||||||||||||||||||||||||||||||||||    
T  19468613 gtgaaagaatcttcgtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagttttc 19468712  T
Q  181 cgcttttccaatacactttgccgcttttcttgatgttcaattcaccttgtttt 233  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19468713 cgcttttccaatacactttgccgcttttcttgatgatcaattcaccttgtttt 19468765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 19555534 - 19555686
Alignment:
Q  81 gtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttc 180  Q
    |||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||||  | |||||||||||||||||||||||||||||||||||||    
T  19555534 gtgaaagaatcttcgtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagttttc 19555633  T
Q  181 cgcttttccaatacactttgccgcttttcttgatgttcaattcaccttgtttt 233  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19555634 cgcttttccaatacactttgccgcttttcttgatgatcaattcaccttgtttt 19555686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 60 - 233
Target Start/End: Complemental strand, 19390699 - 19390526
Alignment:
Q  60 ttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggctggaatattctcgaata 159  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||| |||||  ||  |||||||||  | ||||| ||||||||||    
T  19390699 ttcccatctttaacttcgaaagcaaaagaatcttcatccttgttagagacaataatgtattgatatatacgttgaacattcaccggaatgttctcgaata 19390600  T
Q  160 atccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaattcaccttgtttt 233  Q
    | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  19390599 aaccattgcttttaagttttccgcttttccaatacactttgccgcgtttcttgatgttcaattccccttgtttt 19390526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 56 - 233
Target Start/End: Complemental strand, 19355593 - 19355416
Alignment:
Q  56 aaaattcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggctggaatattctcg 155  Q
    |||||||||||| ||||||||||| |  ||||||||||||||||||||||| |||||||||||| ||||  || ||||||| || |||||||| ||||||    
T  19355593 aaaattcccatcattaacttcgaaagcaaaagaatcttcatccttgttagacacaataatgtaccgatatatactttgaactttcgctggaatgttctcg 19355494  T
Q  156 aataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaattcaccttgtttt 233  Q
    |||| |||||| ||| ||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||||    
T  19355493 aatattccattacttctaagttttccgcttttccaatgcactttgccgcttttccttatgttcaattcaccttctttt 19355416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 65 - 228
Target Start/End: Original strand, 19172821 - 19172984
Alignment:
Q  65 atctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggctggaatattctcgaataatcca 164  Q
    |||||| | |||||| ||||| || ||||||||||||||||||||||||||||| ||||||  || |||||| ||  || |||| |||| ||||||||||    
T  19172821 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacatgttgaactttcactagaatgttcttgaataatcca 19172920  T
Q  165 ttgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaattcacctt 228  Q
    ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  19172921 ttgctgttaagttttccgcttttccaatacactttgccgcgttgcttgatgttcaattcacctt 19172984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 60 - 233
Target Start/End: Complemental strand, 19337569 - 19337396
Alignment:
Q  60 ttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggctggaatattctcgaata 159  Q
    ||||||||||||||||| || |  ||||||||||||||||||||||| |||||||||||||| ||  ||  |||||| || || ||||| |||||||| |    
T  19337569 ttcccatctttaacttcaaaagcaaaagaatcttcatccttgttagacacaataatgtactggtatatacgttgaactttcgcaggaatgttctcgaaca 19337470  T
Q  160 atccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaattcaccttgtttt 233  Q
     |||||||||||| |||||||| |||||||||| ||||||||| |||||| |||||||||||||||||| ||||    
T  19337469 ttccattgcttttgagttttccacttttccaatgcactttgccacttttcctgatgttcaattcaccttctttt 19337396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 65 - 228
Target Start/End: Complemental strand, 19287825 - 19287662
Alignment:
Q  65 atctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggctggaatattctcgaataatcca 164  Q
    |||||| | |||||| ||||| || ||||||||||||||||||||||||||||| ||||||  |  |||||| ||  ||||||| ||||||||||| |||    
T  19287825 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacacgttgaactttcactggaatgttctcgaataaacca 19287726  T
Q  165 ttgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaattcacctt 228  Q
    |||| | || |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  19287725 ttgcgtctacgttttccgcttttccaatacactttgccgcgttgcttgatgttcaattcacctt 19287662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 19371046 - 19370913
Alignment:
Q  90 tcttcatccttgttagagacaataatgtactgatacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttccgcttttcc 189  Q
    |||||||| |||||||||||||| |||||  |||||  || ||| |||||  ||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  19371046 tcttcatctttgttagagacaatcatgtatcgatacacatgttggacattctctggaatgttctcgaataatccattgcttctaagttttccacttttcc 19370947  T
Q  190 aatacactttgccgcttttcttgatgttcaattc 223  Q
    ||| |||||||||   |||||| |||||||||||    
T  19370946 aatgcactttgccttgtttcttaatgttcaattc 19370913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 19341266 - 19341133
Alignment:
Q  90 tcttcatccttgttagagacaataatgtactgatacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttccgcttttcc 189  Q
    |||||||| |||||||||||||| |||||  |||||  || ||| |||||  || |||| |||||||||||||||||||||  ||||||||| |||||||    
T  19341266 tcttcatctttgttagagacaatcatgtatcgatacacatgttggacattctctagaatgttctcgaataatccattgcttccaagttttccacttttcc 19341167  T
Q  190 aatacactttgccgcttttcttgatgttcaattc 223  Q
    ||| |||||||||   |||||| |||||||||||    
T  19341166 aatgcactttgccttgtttcttaatgttcaattc 19341133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 36314615 - 36314825
Alignment:
Q  23 taacttccccttcgaggatagttcccattgtgcaaaattcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactga 122  Q
    |||||| |||||||||||||| ||||||  |  ||| ||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||    
T  36314615 taacttgcccttcgaggatagctcccatcatataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactga 36314714  T
Q  123 tacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaatt 222  Q
    ||| ||| |||||||||  ||||||| |||||||| | ||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||    
T  36314715 tacatatgttgaacattcactggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttcccgcgttttttgatgttcaatt 36314814  T
Q  223 caccttgtttt 233  Q
    |||||||||||    
T  36314815 caccttgtttt 36314825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 19543155 - 19543017
Alignment:
Q  87 gaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggctggaatattctcgaataatccattgcttttaagttttccgcttt 186  Q
    ||||||||||| || ||||| ||||||||||| | ||||  |  ||||||||| || || || ||| ||||||| ||||| ||| |||||||||||||||    
T  19543155 gaatcttcatctttcttagaaacaataatgtattcatacacacgttgaacattcgccggtatgttcacgaataacccatttcttctaagttttccgcttt 19543056  T
Q  187 tccaatacactttgccgcttttcttgatgttcaattcac 225  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  19543055 tccaatacactttgccgcttttcttgatttccaattcac 19543017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University