View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15820_low_1 (Length: 284)
Name: NF15820_low_1
Description: NF15820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15820_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 4144659 - 4144539
Alignment:
| Q |
14 |
tacttgtttggcatatgcatatgatccttctataggttgtatgtattggagtagcgagttaattgatttgcagaaatttcctcatggcggagctgatctc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
4144659 |
tacttgtttggcatatgcatatgatccttctataggttgtatgtattggagtagcgagttaattgatttgcagaaatttcctaccggcggagttgatctc |
4144560 |
T |
|
| Q |
114 |
ttcattcgtgtgccggcagaa |
134 |
Q |
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||||||||||||||||||||| |
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| T |
4144559 |
ttcattcgtgtgccggcagaa |
4144539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 144 - 268
Target Start/End: Complemental strand, 4144976 - 4144852
Alignment:
| Q |
144 |
cttggggttgataaaaatgaatgtgatttttatggaaaatgtgggtcatttggaaactgtgataattctagtgtaccaatttgtagttgtttggaggggt |
243 |
Q |
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|||| ||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || |||| |
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| T |
4144976 |
cttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggaaattgtgataattctagtgtaccaatttgtagttgttttgatgggt |
4144877 |
T |
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| Q |
244 |
ttcagccaaagaatttggtggagtg |
268 |
Q |
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| T |
4144876 |
ttcagccaaagaattcggtggagtg |
4144852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 4152657 - 4152539
Alignment:
| Q |
16 |
cttgtttggcatatgcatatgatccttctataggttgtatgtattggagtagcgagttaattgatttgcagaaatttcctcatggcggagctgatctctt |
115 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
4152657 |
cttgtttggcatatgcatatgatccttctatattttgtatgtattggactggagagttaattgatttgcagaaatttcctaatggcggagttgatctctt |
4152558 |
T |
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| Q |
116 |
cattcgtgtgccggcagaa |
134 |
Q |
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| T |
4152557 |
cgttcgtgtgccggcagaa |
4152539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 4163010 - 4162892
Alignment:
| Q |
16 |
cttgtttggcatatgcatatgatccttctataggttgtatgtattggagtagcgagttaattgatttgcagaaatttcctcatggcggagctgatctctt |
115 |
Q |
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|||||||||| |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| ||||||||| |
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| T |
4163010 |
cttgtttggcttatgcatatgatccttttatacgttgtatgtattggagtagtgagttaattgatttgcagaaatttcctactagcggagttgatctctt |
4162911 |
T |
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| Q |
116 |
cattcgtgtgccggcagaa |
134 |
Q |
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||||||||| || |||||| |
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| T |
4162910 |
cattcgtgttccagcagaa |
4162892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 4123310 - 4123197
Alignment:
| Q |
16 |
cttgtttggcatatgcatatgatccttctataggttgtatgtattggagtagcgagttaattgatttgcagaaatttcctcatggcggagctgatctctt |
115 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||| |||| |||| ||||||||| |
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| T |
4123310 |
cttgtttggcatatgcatatgatccttctatattttgtatgtattggactggagagttaattgatttgcagaaatttccttatggtggagttgatctctt |
4123211 |
T |
|
| Q |
116 |
cattcgtgtgccgg |
129 |
Q |
| |
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|||||| ||||||| |
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| T |
4123210 |
cattcgagtgccgg |
4123197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 4152979 - 4152865
Alignment:
| Q |
144 |
cttggggttgataaaaatgaatgtgatttttatggaaaatgtgggtcatttggaaactgtgataattctagtgtaccaatttgtagttgtttggaggggt |
243 |
Q |
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|||| ||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| ||| ||||||||||||||||| || |||| |
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| T |
4152979 |
cttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctactgtgccaatttgtagttgttttgatgggt |
4152880 |
T |
|
| Q |
244 |
ttcagccaaagaatt |
258 |
Q |
| |
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|| |||||||||||| |
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| T |
4152879 |
ttgagccaaagaatt |
4152865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 144 - 265
Target Start/End: Complemental strand, 4134174 - 4134050
Alignment:
| Q |
144 |
cttggggttgataaaaatgaatgtgatttttatggaaaatgtgggtcatttggaaactgtgataattctagtgtacca---atttgtagttgtttggagg |
240 |
Q |
| |
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|||| ||| ||| ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||| | | |
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| T |
4134174 |
cttgaggtggatcaaaatgagtgtgatttttatggaaaatgtgggccatttggaaattgtgataattctagtgtaccaaatatttgtagttgttttaaag |
4134075 |
T |
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| Q |
241 |
ggtttcagccaaagaatttggtgga |
265 |
Q |
| |
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||||| ||||||||||||||||||| |
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| T |
4134074 |
ggtttgagccaaagaatttggtgga |
4134050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 4123624 - 4123515
Alignment:
| Q |
149 |
ggttgataaaaatgaatgtgatttttatggaaaatgtgggtcatttggaaactgtgataattctagtgtaccaatttgtagttgtttggaggggtttcag |
248 |
Q |
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|
||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||| || |||||| || |
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| T |
4123624 |
ggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgccaatttgtagttgttttgatgggtttgag |
4123525 |
T |
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| Q |
249 |
ccaaagaatt |
258 |
Q |
| |
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||||||||| |
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| T |
4123524 |
gcaaagaatt |
4123515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 4163311 - 4163205
Alignment:
| Q |
165 |
tgtgatttttatggaaaatgtgggtcatttggaaactgtgataattctagtgtacca---atttgtagttgtttggaggggtttcagccaaagaatttgg |
261 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||||||| | |||||| ||||||||||||||| |
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| T |
4163311 |
tgtgatttttatggaaaatgtgggccatttggaaattgtgatatttctagtgtaccaaatatttgtagttgttttaaagggtttgagccaaagaatttgg |
4163212 |
T |
|
| Q |
262 |
tggagtg |
268 |
Q |
| |
|
||||||| |
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| T |
4163211 |
tggagtg |
4163205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 4133852 - 4133734
Alignment:
| Q |
16 |
cttgtttggcatatgcatatgatccttctataggttgtatgtattggagtagcgagttaattgatttgcagaaatttcctcatggcggagctgatctctt |
115 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||| ||||||||||| | || ||||||| |||||| || ||||||||||| |||| ||||||||| |
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| T |
4133852 |
cttgtttggcatatgcatatgatcgttatataggttgcgtgtattggagtggagacttaattggtttgcaaaactttcctcatggaggagttgatctctt |
4133753 |
T |
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| Q |
116 |
cattcgtgtgccggcagaa |
134 |
Q |
| |
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||| ||||| ||||||||| |
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| T |
4133752 |
catccgtgtcccggcagaa |
4133734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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