View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15820_low_4 (Length: 239)
Name: NF15820_low_4
Description: NF15820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15820_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 17140931 - 17140713
Alignment:
| Q |
1 |
tgtattctttatcatgatgattgaagcaaagcatagtattttagctggaaatgtccatgacatgacaaggacagtccttgttaaatatgttcgtttgact |
100 |
Q |
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| T |
17140931 |
tgtattctttatcatgatgattgaagcaaagcatagtattttagctggaaatgtccatgacatgacaaggacagtccttgttaaatatgttcgtttgact |
17140832 |
T |
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| Q |
101 |
agcaataaaccacacaatgttacaacacttaatagttattaatcggggaaaatatatgaagatgataagataaatgtaagtttggttatgaggtgataat |
200 |
Q |
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| T |
17140831 |
agcaataaaccacacaatgttacaacacttactagttattaatcggggaaaatatatgaagatgataagataaatgcaagtttggttctgaggtgataat |
17140732 |
T |
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| Q |
201 |
aattaattttgagtgaata |
219 |
Q |
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||||||||||||||||||| |
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| T |
17140731 |
aattaattttgagtgaata |
17140713 |
T |
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Back To:
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 13102477 - 13102511
Alignment:
| Q |
182 |
ttggttatgaggtgataataattaattttgagtga |
216 |
Q |
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| T |
13102477 |
ttggttatgcggtgataataattaattttgagtga |
13102511 |
T |
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