View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15821_high_10 (Length: 320)
Name: NF15821_high_10
Description: NF15821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15821_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 54479302 - 54479593
Alignment:
| Q |
18 |
caggaacgacatgcatgacagggcgccaaccatttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaatt |
117 |
Q |
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| T |
54479302 |
caggaacgacatgcatgacagggcgccaaccatttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaatt |
54479401 |
T |
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| Q |
118 |
gctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacacca |
217 |
Q |
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| T |
54479402 |
gctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacacca |
54479501 |
T |
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| Q |
218 |
agaatcatgaatcaggtgccaagaatagagttctttatttaacttatcttggactcttgcaaacaacttgatcatcccagaccctttgctact |
310 |
Q |
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| T |
54479502 |
agaatcatgaatcaggtgccaagaatagagttctttatttaacttatcttggactc-tgcaaacaacttgatcatcccagaccctttgatact |
54479593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 290
Target Start/End: Complemental strand, 25044551 - 25044311
Alignment:
| Q |
49 |
atttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgt |
148 |
Q |
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| T |
25044551 |
attttgatgaatccaagattgccaagatgtgtgcattgcaacaaagaaaacagtgtgaagccgataattgccgagaagaagaagaatatcaattggttgt |
25044452 |
T |
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| Q |
149 |
ttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagt |
248 |
Q |
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| T |
25044451 |
ttctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtatttttgcaagtataacaaccatcatagaacaggtgccaaaaatagggt |
25044352 |
T |
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| Q |
249 |
tctttatttaacttatcttggactcttgcaaacaacttgatc |
290 |
Q |
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| T |
25044351 |
tctttatttaacttatcttgaact-atgcaaacaacttgatc |
25044311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 264
Target Start/End: Complemental strand, 25040835 - 25040598
Alignment:
| Q |
27 |
catgcatgacagggcgccaaccatttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaag |
126 |
Q |
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| T |
25040835 |
catgcatgatagggcaccacaaattttgatgaatccaaaattgccaaaatgtttgcattgcaatcaagaaaatagtgttaaaccggtgattgctgagaag |
25040736 |
T |
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| Q |
127 |
aaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatg |
226 |
Q |
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| T |
25040735 |
aaaaagaatatcaattggttgtttctgttgctgggacaaataattggttgttgcaagcttgaacaattgaagtatttttgcaagtacaacggtcatcatc |
25040636 |
T |
|
| Q |
227 |
aatcaggtgccaagaatagagttctttatttaacttat |
264 |
Q |
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| T |
25040635 |
gagctggtgccaagaatagagttctttatttgacttat |
25040598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 76 - 290
Target Start/End: Complemental strand, 10124400 - 10124187
Alignment:
| Q |
76 |
tgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggct |
175 |
Q |
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|||||||| || |||||| ||||| ||||||| |||||||||||||| |||||| || |||||| ||| |||||||||| |||||||||||||||| | |
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| T |
10124400 |
tgtgtgcattgcaatcaagaaaactgtgtgaaaccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt |
10124301 |
T |
|
| Q |
176 |
gctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttatcttggactctt |
275 |
Q |
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| || | || | |||| |||| ||||| ||||| | | | ||||| | | |||||||||||||| |||||||||||||||||||||| ||| || |
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| T |
10124300 |
gttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttctttatttaacttatcttgaact-tt |
10124202 |
T |
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| Q |
276 |
gcaaacaacttgatc |
290 |
Q |
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||||||||||||||| |
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| T |
10124201 |
gcaaacaacttgatc |
10124187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 292
Target Start/End: Complemental strand, 28649982 - 28649786
Alignment:
| Q |
95 |
aaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagct |
194 |
Q |
| |
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|||||| |||||||||| |||||||||| |||||| || ||| || ||| ||||| |||| || |||||||||||||| || |||| | |||||| | |
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| T |
28649982 |
aaaacaatgtgaagccgataattgctgagaagaaaaagaatattaattggttgtttttgttgttgggacaaatgcttggttgttgcaatcttaaacaatt |
28649883 |
T |
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| Q |
195 |
gaagtatttctgcaaacacaccaagaatcatgaatcaggtgcc-aagaatagagttctttatttaacttatcttggactcttgcaaacaacttgatcat |
292 |
Q |
| |
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||||||||| ||||| | | ||| ||||| | || |||| || |||||||||||||||||||||||||||| ||| |||||| ||||||||||| |
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| T |
28649882 |
gaagtatttttgcaagtataacaaccatcatagaaca-atgccaaaaaatagagttctttatttaacttatcttgaact-atgcaaataacttgatcat |
28649786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 264
Target Start/End: Original strand, 21393068 - 21393244
Alignment:
| Q |
88 |
aatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgta |
187 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| || |||||| || |||||| ||| ||||||| || | ||||||||||| || || |||| || | |
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| T |
21393068 |
aatcaagaaaacagtgtgaaaccggtaattgccgagaagaaaaagaatatcaattggttgtttctattgctgggacaaatgctcggttgttgcaagcttg |
21393167 |
T |
|
| Q |
188 |
aacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttat |
264 |
Q |
| |
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|||| |||||||||| ||||| ||| ||| ||||| | | |||||||||||||||||||||||||| |||||| |
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| T |
21393168 |
aacaattgaagtatttttgcaagtacaacaatcatcatcgaaccggtgccaagaatagagttctttatttgacttat |
21393244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 1975327 - 1975173
Alignment:
| Q |
28 |
atgcatgacagggcgccaaccatttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaaga |
127 |
Q |
| |
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|||| ||| ||||| ||||| ||||| ||| | |||| ||||||||| ||||| || || |||||| |||| |||||||| || ||||||||| | |||| |
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| T |
1975327 |
atgcgtgatagggcaccaacaatttgaatgcatccaatattgcctaaatgtgtacattgcaatcaaaaaaatagtgtgaaacctgtaattgctaagaaga |
1975228 |
T |
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| Q |
128 |
aacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcac |
182 |
Q |
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|| ||||||||| ||| ||||| |||| | |||||||||||||| || ||||| |
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| T |
1975227 |
aaaagagtatcaattggttgtttatgttgatgggacaaatgcttggttgttgcac |
1975173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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