View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15821_high_11 (Length: 315)

Name: NF15821_high_11
Description: NF15821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15821_high_11
NF15821_high_11
[»] chr5 (1 HSPs)
chr5 (18-305)||(37218923-37219210)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 37219210 - 37218923
Alignment:
Q  18 acaacattctttcttatgaagtttacttgattttaccatttgctaagaacacattccatctcttagattcctaacttaggaagtcagatacatggttaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37219210 acaacattctttcttatgaagtttacttgattttaccatttgctaagaacacattccatctcttagattcctaacttaggaagtcagatacatggttaat 37219111  T
Q  118 cgagtttgtatttaacgaaccattatatacacataggatcaaagcaaagctatcactactagtaataatgcaactcacaaaataagacacttagaaatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37219110 cgagtttgtatttaacgaaccattatatacacataggatcaaagcaaagctatcactactagtaataatgcaactcacaaaataagacacttagaaatga 37219011  T
Q  218 cttcctctctcaagatgatttcaaaacatcagtaatccacttctcttataataagttgtacaacaaccaatgcatagtagtatagtat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37219010 cttcctctctcaagatgatttcaaaacatcagtaatccacttctcttataataagttgtacaacaaccaatgcatagtagtatagtat 37218923  T

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