View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15821_high_13 (Length: 291)
Name: NF15821_high_13
Description: NF15821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15821_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 2 - 285
Target Start/End: Original strand, 7901755 - 7902038
Alignment:
| Q |
2 |
cttacatcacacagtgtccgaaacagaccggaaacagctatacttacgaattcaacgttactgggcaaagaggaacactatggtggcatgcacacatttt |
101 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7901755 |
cttacatcacacagtgtccgatacagaccggaaacagctatacttacgaattcaacgttactgggcaaagaggaacactatggtggcatgcacacatttt |
7901854 |
T |
|
| Q |
102 |
ctggcttagggccactgtctacggggcaatagtaattatgcctaaacttggaacaccgtttcctttcccacagccagctagagaattcgaaattgtctta |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7901855 |
ctggcttagggccactgtctacggggcaatagtaattatgcctaaacttggaacaccatttcctttcccacagccagctagagaattcgaaattgtctta |
7901954 |
T |
|
| Q |
202 |
ggtaagtattataaagattcatttttccnnnnnnnngtattataaagattcatcggatgaaataagaagtatgaaagatgatgt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
7901955 |
ggtaagtattataaagattcatttttccaaaaaaaagtattataaagattcatgggatgaaataagaagtatgaaagttgatgt |
7902038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 7891414 - 7891544
Alignment:
| Q |
67 |
caaagaggaacactatggtggcatgcacacattttctggcttagggccactgtctacggggcaatagtaattatgcctaaacttggaacaccgtttcctt |
166 |
Q |
| |
|
||||||||||| | ||||||||||| || ||| | ||| | ||||| ||||| || || ||||| || || |||||||||| ||||| || ||||||| |
|
|
| T |
7891414 |
caaagaggaactttgtggtggcatgctcatattctttggttaagggctactgtttatggtgcaattgttatcatgcctaaaccaggaaccccttttcctt |
7891513 |
T |
|
| Q |
167 |
tcccacagccagctagagaattcgaaattgt |
197 |
Q |
| |
|
| ||||| |||||||||||||| |||||||| |
|
|
| T |
7891514 |
ttccacaaccagctagagaatttgaaattgt |
7891544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 31213732 - 31213961
Alignment:
| Q |
2 |
cttacatcacacagtgtccgaaacagaccggaaacagctatacttacgaattcaacgttactgggcaaagaggaaca---ctatggtggcatgcacacat |
98 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
31213732 |
cttacatcacacagtgtccgatacagaccggaaacagctatacttacaaattcaacgttactgggaaaagaggaacaacactatggtggcatgcacacat |
31213831 |
T |
|
| Q |
99 |
tttctggcttagggccactgtctacggggcaatagtaattatgcctaaacttggaacaccgtttcctttcccacagccagctagagaattcgaaattgtc |
198 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
31213832 |
tttctggctgagggccactgtctatggggcaatagtaatcatgcctaaacttggaatacc-tttcctttcccacagccagctagagaagtcaaaattgtc |
31213930 |
T |
|
| Q |
199 |
ttaggtaagtattataaagattcatttttcc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31213931 |
ttaggtaagtattataaagattcatttttcc |
31213961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University