View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15821_high_3 (Length: 656)

Name: NF15821_high_3
Description: NF15821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15821_high_3
NF15821_high_3
[»] chr7 (3 HSPs)
chr7 (234-487)||(5014997-5015250)
chr7 (16-90)||(5015592-5015666)
chr7 (301-359)||(29906635-29906693)
[»] chr3 (3 HSPs)
chr3 (267-342)||(2315461-2315536)
chr3 (289-346)||(13806134-13806191)
chr3 (267-339)||(3888544-3888616)
[»] chr1 (2 HSPs)
chr1 (270-352)||(45301648-45301730)
chr1 (243-359)||(26128494-26128610)
[»] chr4 (3 HSPs)
chr4 (273-346)||(52906395-52906468)
chr4 (273-341)||(10983570-10983638)
chr4 (261-337)||(41112201-41112277)
[»] chr5 (3 HSPs)
chr5 (267-339)||(43537567-43537639)
chr5 (295-346)||(12498248-12498299)
chr5 (313-345)||(3041594-3041626)
[»] chr8 (1 HSPs)
chr8 (284-344)||(30032265-30032326)
[»] chr6 (1 HSPs)
chr6 (267-332)||(30006592-30006657)
[»] scaffold0137 (1 HSPs)
scaffold0137 (267-339)||(2887-2959)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 234 - 487
Target Start/End: Complemental strand, 5015250 - 5014997
Alignment:
Q  234 cttgaaaattgctaggtctgttttttaaagttataaaagaaaaaggtgacggaaatattggatctacattctcttatttttattagttggagtgaaaatg 333  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5015250 cttgaaaattgctagatctgtttttgaaagttataaaagaaaaaggtgagggaaatattggatctacattctcttatttttattagttgaagtgaaaatg 5015151  T
Q  334 aaaacaaaaaacaagagaaataaatgagactttaccttacagttgaggtaattggtaagctgtttgaatgatataagattgaatttgaatgtggtgtatg 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5015150 aaaacaaaaaacaagagaaataaatgagactttaccttacagttgaggtaattggtaagctgttggaatgatataagattgaatttgaatgtggtgtatg 5015051  T
Q  434 aagaacatcataaagataaaaatatttagaatggttagcatgatgtaaattgtt 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5015050 aagaacatcataaagataaaaatatttagaatggttagcatgatgtaaattgtt 5014997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 5015666 - 5015592
Alignment:
Q  16 attcttattaggtctataatccttaggtggagatgaacatggggtccatcttcaattagaggttcaaaaaatcta 90  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5015666 attcttattaggtatataatcctttggtggagatgaatatggggtccatcttcaattagaggttcaaaaaatcta 5015592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 29906635 - 29906693
Alignment:
Q  301 attctcttatttttattagttggagtgaaaatgaaaacaaaaaacaagagaaataaatg 359  Q
    |||||||||  ||||||||||| ||||||||||||||||  ||||| ||||| ||||||    
T  29906635 attctcttacgtttattagttgaagtgaaaatgaaaacagtaaacatgagaagtaaatg 29906693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 2315461 - 2315536
Alignment:
Q  267 taaaagaaaaaggtgacggaaatattggatctacattctcttatttttattagttggagtgaaaatgaaaacaaaa 342  Q
    |||||||||| ||||  |||||||||||||||| |||||||||| |||||||| || |||||||||||||||||||    
T  2315461 taaaagaaaacggtgggggaaatattggatctatattctcttatgtttattagatgaagtgaaaatgaaaacaaaa 2315536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 13806134 - 13806191
Alignment:
Q  289 tattggatctacattctcttatttttattagttggagtgaaaatgaaaacaaaaaaca 346  Q
    ||||||||| | |||||||||| ||||||||||| |||||||||||||||| ||||||    
T  13806134 tattggatcaatattctcttatgtttattagttgaagtgaaaatgaaaacagaaaaca 13806191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 3888544 - 3888616
Alignment:
Q  267 taaaagaaaaaggtgacggaaatattggatctacattctcttatttttattagttggagtgaaaatgaaaaca 339  Q
    |||| ||||| |||||  ||||| ||| || | ||||||||||| |||||||||||  |||||||||||||||    
T  3888544 taaacgaaaatggtgagcgaaatgttgaatttccattctcttatgtttattagttgaggtgaaaatgaaaaca 3888616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 45301730 - 45301648
Alignment:
Q  270 aagaaaaaggtgacggaaatattggatctacattctcttatttttattagttggagtgaaaatgaaaacaaaaaacaagagaa 352  Q
    ||||||| ||||| | ||||||||||| || |||||||||| ||||||  ||| | ||||||||||||||| ||||| |||||    
T  45301730 aagaaaatggtgaggaaaatattggatatatattctcttatgtttattgattgaattgaaaatgaaaacaagaaacatgagaa 45301648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 359
Target Start/End: Complemental strand, 26128610 - 26128494
Alignment:
Q  243 tgctaggtctgttttttaaagttataaaagaaaaaggtgacggaaatattggatctacattctcttatttttattagttggagtgaaaatgaaaacaaaa 342  Q
    |||||| ||| ||||  ||| ||||||||||||| ||||| |  | ||||| ||||||||| |||| | ||||||| |  |||||||||||||||||| |    
T  26128610 tgctagatctattttaaaaaattataaaagaaaatggtgaggtgagtattgaatctacattatcttgtgtttattaataagagtgaaaatgaaaacaaga 26128511  T
Q  343 aacaagagaaataaatg 359  Q
    || | ||||| ||||||    
T  26128510 aaaatgagaagtaaatg 26128494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 273 - 346
Target Start/End: Original strand, 52906395 - 52906468
Alignment:
Q  273 aaaaaggtgacggaaatattggatctacattctcttatttttattagttggagtgaaaatgaaaacaaaaaaca 346  Q
    |||| ||||| | ||||| | |||||| ||||||||||  |||||||||| |||||||||||||||| ||||||    
T  52906395 aaaacggtgaggaaaatacttgatctatattctcttatgattattagttgaagtgaaaatgaaaacagaaaaca 52906468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 10983570 - 10983638
Alignment:
Q  273 aaaaaggtgacggaaatattggatctacattctcttatttttattagttggagtgaaaatgaaaacaaa 341  Q
    |||| ||||| | ||||||| | |||| |||||||||| ||||||||||| | ||| ||||||||||||    
T  10983570 aaaatggtgaggaaaatatttgttctatattctcttatgtttattagttgaactgacaatgaaaacaaa 10983638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 41112277 - 41112201
Alignment:
Q  261 aagttataaaagaaaaaggtgacggaaatattggatctacattctcttatttttattagttggagtgaaaatgaaaa 337  Q
    ||||| |||||||||| ||||| | | |||||||||||| |||||||||| |||| || ||   |||||||||||||    
T  41112277 aagttgtaaaagaaaatggtgaggaatatattggatctatattctcttatgtttactaattcaggtgaaaatgaaaa 41112201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 43537639 - 43537567
Alignment:
Q  267 taaaagaaaaaggtgacggaaatattggatctacattctcttatttttattagttggagtgaaaatgaaaaca 339  Q
    |||||||||| |||||   |||||||  ||||| |||||| ||| ||||||||||| ||||||||||||||||    
T  43537639 taaaagaaaatggtgagaaaaatattaaatctatattctcctatgtttattagttgaagtgaaaatgaaaaca 43537567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 12498248 - 12498299
Alignment:
Q  295 atctacattctcttatttttattagttggagtgaaaatgaaaacaaaaaaca 346  Q
    ||||| |||||||||| ||||||||||  |||||||||||||||| ||||||    
T  12498248 atctatattctcttatgtttattagtttaagtgaaaatgaaaacagaaaaca 12498299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 3041626 - 3041594
Alignment:
Q  313 ttattagttggagtgaaaatgaaaacaaaaaac 345  Q
    ||||||||||||||||||||||||| |||||||    
T  3041626 ttattagttggagtgaaaatgaaaataaaaaac 3041594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 30032265 - 30032326
Alignment:
Q  284 ggaaatattggatctacattctcttatttttattagttggagtg-aaaatgaaaacaaaaaa 344  Q
    |||||||||| ||||| |||||||||| ||||||||||| | || |||||||||||| ||||    
T  30032265 ggaaatattgaatctagattctcttatgtttattagttgaaatgaaaaatgaaaacagaaaa 30032326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 30006592 - 30006657
Alignment:
Q  267 taaaagaaaaaggtgacggaaatattggatctacattctcttatttttattagttggagtgaaaat 332  Q
    |||||||||| |||||  |||||||| |||||| ||| || ||| ||||||||||| |||||||||    
T  30006592 taaaagaaaatggtgatagaaatatttgatctatattttcctatgtttattagttgaagtgaaaat 30006657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 2887 - 2959
Alignment:
Q  267 taaaagaaaaaggtgacggaaatattggatctacattctcttatttttattagttggagtgaaaatgaaaaca 339  Q
    |||| ||||| |||||  ||||| ||| || | ||||||||||| |||||||||||  |||||||||||||||    
T  2887 taaacgaaaatggtgagcgaaatgttgaatttccattctcttatgtttattagttgaggtgaaaatgaaaaca 2959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University