View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15821_high_9 (Length: 357)
Name: NF15821_high_9
Description: NF15821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15821_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 30395163 - 30394843
Alignment:
| Q |
20 |
tgttgagtgccccttgaaacaactaaagctcaatatgtaaaacattcctccatccaacatggtatcagaacccactaacagctcgtatcaatcctaacat |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30395163 |
tgttgagtgccccttgaaacaactacagctcaatatgtaaaacattcctccatccaacatggtatcagaacccactaacagctcgtatcaatcctaacat |
30395064 |
T |
|
| Q |
120 |
agatgcatataaggtattgtcacaaatcgactttacaactggaccgctaaagagactaatctagttggacttaagaggaaaaatcacaactgaaccactg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30395063 |
agatgcatataaggtattgtcacaaatcgactttataactggaccgctaaagagactaatctagttggacttaagaggaaaaatcacaactgaaccactg |
30394964 |
T |
|
| Q |
220 |
aagagactaatcgagttggacctcaaaggaagagttgaaaataagagtagcatattgaataatccgaaaatctgagggcagttttgaaatttaggaggac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30394963 |
aagagactaatcgagttggacctcaaaggaagagttgaaaataagagtagcatattgaataatccgaaaatctgagggcagttttgaaatttaggaggac |
30394864 |
T |
|
| Q |
320 |
gcatgagaaacatgacggatg |
340 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30394863 |
gcatgagaaacatgacggatg |
30394843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 30472609 - 30472300
Alignment:
| Q |
20 |
tgttgagtgccccttgaaacaactaaagctcaatatgtaaaacattcctccatccaacatggtatcagaacccactaacagctcgtatcaatcctaacat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30472609 |
tgttgagtgccccttgaaacaactaaagctcaatatgtaaaacattcctccatccaacatggtatcagaacctactaacagctcgtatcaatcctaacat |
30472510 |
T |
|
| Q |
120 |
agatgcatataaggtattgtcacaaatcgactttacaactggaccgctaaagagactaatctagttggacttaagaggaaaaatcacaactgaaccactg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30472509 |
agatgcatataaggtattgtcacaaatcgactttataactggaccgctaaagagactaatctagttggacttaagaggaaaaatcacaactgaaccactg |
30472410 |
T |
|
| Q |
220 |
aagagactaatcgagttggacctcaaaggaagagttgaaaataagagtagcatattgaataatccgaaaatctgagggcagttttgaaatttaggaggac |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30472409 |
aagagactaatcgagttggacctcaaaggaagagttgaaaataagagtagcatattgtataatccgaaaatctgagggcagttttgaaatttaggaggac |
30472310 |
T |
|
| Q |
320 |
gcatgagaaa |
329 |
Q |
| |
|
|||||||||| |
|
|
| T |
30472309 |
gcatgagaaa |
30472300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University