View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15821_low_1 (Length: 735)
Name: NF15821_low_1
Description: NF15821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15821_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 680; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 16 - 723
Target Start/End: Original strand, 45512592 - 45513299
Alignment:
| Q |
16 |
atttggacgattacatgccttgttcaccaatagttgctccaaatgtgagctcatctttgttgcaattggaacacttgacttatttggacttgtctagaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45512592 |
atttggacgattacatgccttgttcaccaatagttgctccaaatgtgagctcatctttgttgcaattggaacacttgacttatttggacttgtctggaaa |
45512691 |
T |
|
| Q |
116 |
taatttcagtgggagtccaattcctatgttcttgggttccatgggacgccttgagtatctctctctgtctcatgctcgtcttagcgggaggattcccaac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512692 |
taatttcagtgggagtccaattcctatgttcttgggttccatgggacgccttgagtatctctctctgtctcatgctcgtcttagcgggaggattcccaac |
45512791 |
T |
|
| Q |
216 |
agtctcagaaatctcaagaacctacaattccttgatctcagcttcaattactattaccttacgcaatttgaagagagagaattacaaatggatgacgaca |
315 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45512792 |
agtctcagaaatctcaagaacctacgattccttgatctcagcttcaattactattaccttacgcaatttgaagagagagaattacaaatggatgacggca |
45512891 |
T |
|
| Q |
316 |
ccagttggatttcaaaccttcactcactcaaacaccttgacttgagtggtattcgtctcaatgacaagcgcaacttgttccaggtactcaatacacttcc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45512892 |
ccagttggatttcaaaccttcactcactcaaacaccttgacttgagtggtattcgtctcaatgacacgcgcaacttgttccaggtactcaatacacttcc |
45512991 |
T |
|
| Q |
416 |
ttctttattaaatctttcactgtctggatgtagagttgacaattcactcattcctcgttatgctttccaaaacatgacatctcttatctatcttgatctc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512992 |
ttctttattaaatctttcactgtctggatgtagagttgacaattcactcattcctcgttatgctttccaaaacatgacatctcttatctatcttgatctc |
45513091 |
T |
|
| Q |
516 |
tcatcaaatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccat |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45513092 |
tcatcaaatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccat |
45513191 |
T |
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| Q |
616 |
tatggttcagtcactttgagaaacttacccttcttgacctttcttacaatgggctttatggtcaaatacctcatgctttcacgaacttgtcatccctggt |
715 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45513192 |
tatggttcggtcactttgagaaacttacccttcttgacctttcttataatgggctttatggtcaaatacctcatgctttcacgaacttgtcatccctggt |
45513291 |
T |
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| Q |
716 |
tcatctca |
723 |
Q |
| |
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||||||| |
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| T |
45513292 |
gcatctca |
45513299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 22848928 - 22848797
Alignment:
| Q |
55 |
caaatgtgagctcatctttgttgcaattggaacacttgacttatttggacttgtctagaaataatttcagtgggagtccaattcctatgttcttgggttc |
154 |
Q |
| |
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||||| ||||||||||||||||||| |||||| |||||||||||||||||||| || ||||| |||||| | ||||||||||||||||||| | ||||| |
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| T |
22848928 |
caaatctgagctcatctttgttgcacttggaatacttgacttatttggacttgactggaaatgatttcaatttgagtccaattcctatgttcgtaggttc |
22848829 |
T |
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| Q |
155 |
catgggacgccttgagtatctctctctgtctc |
186 |
Q |
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||||||||| ||||||||||||||||| |||| |
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| T |
22848828 |
catgggacgtcttgagtatctctctctctctc |
22848797 |
T |
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