View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15821_low_12 (Length: 315)
Name: NF15821_low_12
Description: NF15821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15821_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 37219210 - 37218923
Alignment:
| Q |
18 |
acaacattctttcttatgaagtttacttgattttaccatttgctaagaacacattccatctcttagattcctaacttaggaagtcagatacatggttaat |
117 |
Q |
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| T |
37219210 |
acaacattctttcttatgaagtttacttgattttaccatttgctaagaacacattccatctcttagattcctaacttaggaagtcagatacatggttaat |
37219111 |
T |
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| Q |
118 |
cgagtttgtatttaacgaaccattatatacacataggatcaaagcaaagctatcactactagtaataatgcaactcacaaaataagacacttagaaatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37219110 |
cgagtttgtatttaacgaaccattatatacacataggatcaaagcaaagctatcactactagtaataatgcaactcacaaaataagacacttagaaatga |
37219011 |
T |
|
| Q |
218 |
cttcctctctcaagatgatttcaaaacatcagtaatccacttctcttataataagttgtacaacaaccaatgcatagtagtatagtat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37219010 |
cttcctctctcaagatgatttcaaaacatcagtaatccacttctcttataataagttgtacaacaaccaatgcatagtagtatagtat |
37218923 |
T |
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