View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15821_low_13 (Length: 314)
Name: NF15821_low_13
Description: NF15821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15821_low_13 |
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| [»] scaffold0775 (1 HSPs) |
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Alignment Details
Target: scaffold0775 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0775
Description:
Target: scaffold0775; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 2044 - 1732
Alignment:
| Q |
1 |
attaatcttagcctccgtgatagaagaaatgaacaaataactgaatacccaaagatacaagatatgaaacccatgaccaatcgaagagaatgtgtcatct |
100 |
Q |
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| T |
2044 |
attaatcttagcctccgtgatagaagaaatgaacaaataactgaatacccaaagatacaagatatgaaacccatgaccaatcgaagataatgtgtcatct |
1945 |
T |
|
| Q |
101 |
ctattgattaccatcaggaatgttgaagtaatggtaattttacggagggaatttatgtcacaaaagtttcttgtggcacaaaaccttccataagttttca |
200 |
Q |
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| T |
1944 |
ctattgattaccattaggaattttgaagtaatggtaattttatggagggaatttatgtcacaaaagtttcttgtggcataaaaccttccataagttttca |
1845 |
T |
|
| Q |
201 |
attatcacttcactttttgtcgattccttcaagttcctaatggtaattacgagatcatcacgagttagaatcatgtgttttgatcattgagtttattgtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1844 |
attatcacttcactttttgtcgattccttcaagttcctaatggtaattaggagatcatcacgagttagaatcatgtgttttgatcattgagtttattgtt |
1745 |
T |
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| Q |
301 |
tcatatcactcga |
313 |
Q |
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||| |||| |||| |
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| T |
1744 |
tcagatcattcga |
1732 |
T |
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