View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15821_low_14 (Length: 307)
Name: NF15821_low_14
Description: NF15821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15821_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 35348639 - 35348491
Alignment:
| Q |
11 |
cacagatgtcgcgaatcctatcattgcttgaggcgagttattttaagttagaattaaaatggaacctaactgggctacacactaactcgtgtgttttgtg |
110 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| || |||||| |||||||||||||||||||| |
|
|
| T |
35348639 |
cacagatatcgcaaatcctattattgcttgaggcgagttattttgagttagaattaaaatggaacctaagtgtgctacatactaactcgtgtgttttgtg |
35348540 |
T |
|
| Q |
111 |
cgaaattgttttcgtgccaagtatcattgttcaaaacttaacactcttt |
159 |
Q |
| |
|
||| ||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35348539 |
cgagattcttgtcgtgccaagtatcattgttcaaaacttaacactcttt |
35348491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 35343958 - 35343846
Alignment:
| Q |
56 |
agttagaattaaaatggaacctaactgggctacacactaactcgtgtgttttgtgcgaaattgttttcgtgccaagtatcattgttcaaaacttaacact |
155 |
Q |
| |
|
|||| ||||||||||||||| | || |||||| ||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
35343958 |
agttggaattaaaatggaacatgtgtgagctacatactaactcgtgtgttttacgcgaaattatttttgtgccaagtatcattattcaaaacttaacact |
35343859 |
T |
|
| Q |
156 |
ctttcgtattgat |
168 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
35343858 |
cttttgtattgat |
35343846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 35348490 - 35348424
Alignment:
| Q |
212 |
tgacatccagcctatttacaggcactaacaaactaatagttaagtactaaattcgaacaataaacga |
278 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35348490 |
tgacatcgagcctatttacaggcactaacaaacaaatagttaagtactaaattcgaacaataaacga |
35348424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 35371372 - 35371432
Alignment:
| Q |
209 |
taatgacatccagcctatttacaggcactaacaaactaatagttaagtactaaattcgaac |
269 |
Q |
| |
|
|||||||||| |||||||||| | ||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
35371372 |
taatgacatctagcctatttataagcaataacaaactaatagttaagtactaatttcgaac |
35371432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 35355370 - 35355425
Alignment:
| Q |
207 |
tataatgacatccagcctatttac-aggcactaacaaactaatagttaagtactaa |
261 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
35355370 |
tataatgacatcgagcctattaaataggcactaacaaactaatagttaagtactaa |
35355425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University