View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15821_low_18 (Length: 202)

Name: NF15821_low_18
Description: NF15821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15821_low_18
NF15821_low_18
[»] chr8 (14 HSPs)
chr8 (14-185)||(6425208-6425379)
chr8 (14-185)||(6290426-6290597)
chr8 (14-185)||(6275674-6275845)
chr8 (14-187)||(6353516-6353689)
chr8 (14-158)||(6371249-6371393)
chr8 (14-187)||(6392012-6392185)
chr8 (14-185)||(6333102-6333273)
chr8 (14-185)||(6364391-6364562)
chr8 (14-185)||(7460590-7460761)
chr8 (14-187)||(6411176-6411349)
chr8 (11-185)||(6322535-6322709)
chr8 (18-107)||(6264927-6265016)
chr8 (11-99)||(6452174-6452262)
chr8 (11-104)||(6458262-6458355)
[»] chr2 (2 HSPs)
chr2 (11-101)||(42694394-42694484)
chr2 (11-101)||(42687173-42687263)
[»] chr3 (2 HSPs)
chr3 (28-104)||(36743945-36744021)
chr3 (31-99)||(35722304-35722372)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 6425379 - 6425208
Alignment:
Q  14 aagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6425379 aagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctga 6425280  T
Q  114 ctcaaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaac 185  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6425279 ctcgaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaac 6425208  T

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Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 6290597 - 6290426
Alignment:
Q  14 aagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctga 113  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||    
T  6290597 aagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgatttaggtgagcctga 6290498  T
Q  114 ctcaaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaac 185  Q
    ||| ||||||   ||||  |||| | ||||||| ||||||||||  || ||||||||||||||||| |||||    
T  6290497 ctcgaaacctcaattggcgcgtcaaattcttgggggatcgagcaatttcccttaccctcgaaggggaagaac 6290426  T

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Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 6275845 - 6275674
Alignment:
Q  14 aagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctga 113  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||| |||||    
T  6275845 aagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaatgatgtgggtgatcctga 6275746  T
Q  114 ctcaaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaac 185  Q
    |   ||| | | ||||| |||||| ||| |||||||||| | ||||||||||||||||||||| ||||||||    
T  6275745 caagaaagcaagcttggctcgtcccgttattggaggatccaacaccttgccttaccctcgaagagggagaac 6275674  T

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Target: chr8; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 6353689 - 6353516
Alignment:
Q  14 aagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctga 113  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  6353689 aagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgatttgggtgagcctga 6353590  T
Q  114 ctcaaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaactg 187  Q
    ||| ||||||   ||||  |||| | ||||||| ||||| |||   || ||||||||||||||||| |||||||    
T  6353589 ctcgaaacctcaattggcgcgtcaaattcttgggggatcaagcgatttcccttaccctcgaaggggaagaactg 6353516  T

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Target: chr8; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 6371393 - 6371249
Alignment:
Q  14 aagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctga 113  Q
    |||||||||||||||||||||||||||||||||  || |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| || ||    
T  6371393 aagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatgtctacaatgatttgggtgaaccaga 6371294  T
Q  114 ctcaaaacctaccttgggtcgtccagttcttggaggatcgagcac 158  Q
    |  | |  ||  ||||||||||||||||||||| ||||| |||||    
T  6371293 caaagaggctggcttgggtcgtccagttcttgggggatcaagcac 6371249  T

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Target: chr8; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 6392185 - 6392012
Alignment:
Q  14 aagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctga 113  Q
    ||||||| ||||| |||||||||||||||||||  |||||||| ||||||||||| || || |||||||| ||||||||||||||||||||| | || ||    
T  6392185 aagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggtcaaccaga 6392086  T
Q  114 ctcaaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaactg 187  Q
    |  ||| |||  ||||  ||||||||||||||| ||||| |   |||||||||||||||||||||| |||||||    
T  6392085 ccaaaatccttgcttgtatcgtccagttcttgggggatcaactgccttgccttaccctcgaaggggaagaactg 6392012  T

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Target: chr8; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 6333273 - 6333102
Alignment:
Q  14 aagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctga 113  Q
    ||||||| |||||||||||||||||||||||||  || |||||||| |||| ||| ||||||||||| |||||||| |||||||| |||||||| |||||    
T  6333273 aagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggataggatctatgactacgatgtttacaatgacttgggtgatcctga 6333174  T
Q  114 ctcaaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaac 185  Q
    |   |||   | ||||| |||||| ||| |||||||||| |  | |||||||||||||||||||||||||||    
T  6333173 caagaaagaaagcttggctcgtcccgttgttggaggatccaataacttgccttaccctcgaagggggagaac 6333102  T

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Target: chr8; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 6364562 - 6364391
Alignment:
Q  14 aagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctga 113  Q
    ||||||| |||||||||||||||||||||||||  |||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||    ||    
T  6364562 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttgggtgatgtgga 6364463  T
Q  114 ctcaaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaac 185  Q
    |   ||  |||  |||| |||||| ||| |||||||||| |||||| | |||||||||||||| ||||||||    
T  6364462 caagaacgctagtttggctcgtcctgttgttggaggatctagcaccctcccttaccctcgaagagggagaac 6364391  T

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Target: chr8; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 7460761 - 7460590
Alignment:
Q  14 aagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctga 113  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||||||||| || || |||||||| |||||||||||||| |||||||| || ||    
T  7460761 aagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatgggacagaatatatgattatgatgtctacaatgacttgggtgatcccga 7460662  T
Q  114 ctcaaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaac 185  Q
    |   ||| ||| ||||| |||||| |||  ||||||| |  | | ||||||||||||||||||||| |||||    
T  7460661 ccagaaagctagcttggctcgtcctgttgctggaggacctggaaacttgccttaccctcgaaggggaagaac 7460590  T

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Target: chr8; HSP #10
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 6411349 - 6411176
Alignment:
Q  14 aagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctga 113  Q
    ||||||| |||||||||||||||||||||||||  |||||||| |||| |||||| || || |||||||| ||||||||||||||||||||| | || ||    
T  6411349 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttgggtcaaccaga 6411250  T
Q  114 ctcaaaacctaccttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaactg 187  Q
    |  ||  |||  ||||  ||||||||||||||| |||||   | |||||||||||||||||||||| |||||||    
T  6411249 cgaaagtccttgcttgtatcgtccagttcttgggggatcagccgccttgccttaccctcgaaggggaagaactg 6411176  T

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Target: chr8; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 6322709 - 6322535
Alignment:
Q  11 gagaagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtgagcc 110  Q
    |||||||||| |||||||||||||||||||||||||  ||  |||||||||||   || || |||||||| |||||||| |||||||| |||||||| ||    
T  6322709 gagaagaagaattgaagactttaagaggagatggaacgggtcagcgcaaggaacacgatagaatctatgactacgatgtttacaatgacttgggtgatcc 6322610  T
Q  111 tgactcaaaacctac-cttgggtcgtccagttcttggaggatcgagcaccttgccttaccctcgaagggggagaac 185  Q
    ||||  |  ||  || ||||| |||||| ||| ||||||||||   |||||||||||||||||||||||| |||||    
T  6322609 tgac-aagtacgcacacttggctcgtcccgttattggaggatccgacaccttgccttaccctcgaaggggcagaac 6322535  T

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Target: chr8; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 6265016 - 6264927
Alignment:
Q  18 agagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttgggtga 107  Q
    |||||||||||||||||||||||||||||  || |||||||| |||||||| ||  | |||||||| ||||| |||||||||||||||||    
T  6265016 agagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgatttgggtga 6264927  T

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Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 6452262 - 6452174
Alignment:
Q  11 gagaagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgat 99  Q
    |||||||||||||| ||| | |||||||||||||||  ||||| ||||| |||||||| ||||| || ||||| ||||| || ||||||    
T  6452262 gagaagaagagttgcagaatctaagaggagatggaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgat 6452174  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 6458355 - 6458262
Alignment:
Q  11 gagaagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttggg 104  Q
    |||||||||||||| ||||| |||||||||||||||  ||||||||||| |||  ||| ||  | |||||||| ||| | || |||||||||||    
T  6458355 gagaagaagagttgcagactctaagaggagatggaactggagagcgcaaagaagcggatagagtttatgattatgatatttataatgatttggg 6458262  T

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Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 42694484 - 42694394
Alignment:
Q  11 gagaagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgattt 101  Q
    |||||||||| ||||| | ||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  42694484 gagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgattt 42694394  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 42687173 - 42687263
Alignment:
Q  11 gagaagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgattt 101  Q
    |||||||||| ||| | | |||||| |||||||||| |||||||||||||  |   ||||||||||| |||||||||||||||||||||||    
T  42687173 gagaagaagaattgcaaaatttaaggggagatggaacaggagagcgcaagttacatgaaaggatctacgattacgatgtctacaatgattt 42687263  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 36743945 - 36744021
Alignment:
Q  28 actttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttggg 104  Q
    |||||||| |||||||||| || | ||||  |||||||||| || ||||||||||| ||||| ||||||||||||||    
T  36743945 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 36744021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 35722304 - 35722372
Alignment:
Q  31 ttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgat 99  Q
    ||||||||| ||||| |||||||||| ||| |||  || || ||||||||||| |||||||||||||||    
T  35722304 ttaagaggaaatggagaaggagagcgtaagaaatcagacagaatctatgattatgatgtctacaatgat 35722372  T

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