View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15821_low_2 (Length: 679)
Name: NF15821_low_2
Description: NF15821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15821_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 46 - 284
Target Start/End: Complemental strand, 48277713 - 48277475
Alignment:
| Q |
46 |
gaagagtgtggtagggcatgtcacatggcctttggtattagagaaattgaatcttgcggttttagacgggtatagctgcatgtagattcaaaggtctcac |
145 |
Q |
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| T |
48277713 |
gaagagtgtggtagggcatgtcacatggcctttggtattagagaaattgaatcttgcggttttagacgggtacagctgcatgtagattcaaaggtcgcac |
48277614 |
T |
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| Q |
146 |
atactttatagtatcatctaaagaggaatgtagtttttaaggtgctagattgatgtggcgtataatcaagtggctagaattggattgagtaatgaaagtg |
245 |
Q |
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| T |
48277613 |
atactttatagtatcatctaaagaggaatgtagtttttaagatgctagattgatgtgacggataatcaagtggctagaattggattgagtaatgaaagtg |
48277514 |
T |
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| Q |
246 |
tgtcactcttagtctaattatgaagcaaacgaatgtgag |
284 |
Q |
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| T |
48277513 |
tgtcactcttagtcttattatgaagcaaacaaatgtgag |
48277475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 417 - 659
Target Start/End: Complemental strand, 48277262 - 48277024
Alignment:
| Q |
417 |
tactctaattttgtttaactataaaagaaattttattctatttatttgtacaaataaatgatatgactaaaactagtgattttagaggaatatcaacgac |
516 |
Q |
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| T |
48277262 |
tactctaattttgtttaactataaaagaaattttattctatttatttgtacaaataaatgatatgactaaaactagtgattttagaggaatatcaacgac |
48277163 |
T |
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| Q |
517 |
aaaatatatatattatagctaccaaaaccaaattcactggttattgcagaaaaatagnnnnnnnagaggatggattatagaaaaatacttggtggtgaca |
616 |
Q |
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| T |
48277162 |
aaaat----atattatagctaccaaaaccaaattcactggttattgcagaaaaatagtttttttagaggatggattatagaaaaatacttggtggtgaca |
48277067 |
T |
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| Q |
617 |
attatttaccataatactctgaacagagcaattttgaatatat |
659 |
Q |
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| T |
48277066 |
attatttaccataatactctgaacagagcaattttcaatatat |
48277024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 297 - 425
Target Start/End: Complemental strand, 48277434 - 48277306
Alignment:
| Q |
297 |
tgatatcatatgaacaaggtccgattcatattagttttttagattttgctgattatgtgggagttacaactccttgttttcggcttcaaacctctaatta |
396 |
Q |
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| T |
48277434 |
tgatatcatatgaacaacatccgattcatattagttttttagattttgctgattatgtgggagttacaactccttgttttcggcttcaaacctctaatta |
48277335 |
T |
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| Q |
397 |
tcttttttcttttcatggtttactctaat |
425 |
Q |
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| T |
48277334 |
tcttttttcttttcatggtttactctaat |
48277306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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