View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15821_low_7 (Length: 424)

Name: NF15821_low_7
Description: NF15821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15821_low_7
NF15821_low_7
[»] chr8 (5 HSPs)
chr8 (268-406)||(9835522-9835658)
chr8 (181-270)||(25130581-25130669)
chr8 (48-131)||(38703219-38703302)
chr8 (10-50)||(5660192-5660232)
chr8 (15-50)||(18559551-18559586)
[»] chr5 (5 HSPs)
chr5 (48-177)||(19538814-19538943)
chr5 (15-50)||(19545390-19545425)
chr5 (15-50)||(25073010-25073045)
chr5 (15-50)||(25130981-25131016)
chr5 (16-50)||(40690150-40690184)
[»] chr4 (1 HSPs)
chr4 (181-270)||(43301091-43301180)
[»] scaffold0001 (1 HSPs)
scaffold0001 (181-270)||(142326-142415)
[»] chr2 (2 HSPs)
chr2 (48-141)||(26216456-26216549)
chr2 (15-50)||(26223018-26223053)
[»] chr1 (4 HSPs)
chr1 (181-270)||(10800746-10800836)
chr1 (181-270)||(13569347-13569437)
chr1 (10-50)||(27302047-27302087)
chr1 (15-50)||(20572619-20572654)
[»] chr6 (2 HSPs)
chr6 (197-270)||(24500602-24500675)
chr6 (10-50)||(24498405-24498445)
[»] scaffold0170 (1 HSPs)
scaffold0170 (181-270)||(8342-8432)
[»] chr3 (1 HSPs)
chr3 (15-50)||(16368037-16368072)
[»] chr7 (2 HSPs)
chr7 (15-50)||(43941643-43941678)
chr7 (17-50)||(41679107-41679140)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 268 - 406
Target Start/End: Original strand, 9835522 - 9835658
Alignment:
Q  268 tattaaataggccataaaacctgacttatattactaggaaatttaatcataaaatttgagtgagtgacaatatctatacattcttcattgaaaaatgcac 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9835522 tattaaataggccataaaacctgacttatattactaggaaatttaatcataaaatttgagtgagtgacaatatatatacattcttcattgaaaaatgcac 9835621  T
Q  368 aagaaaccatacatatatatatccaattgaagatgaaac 406  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  9835622 aagaaaccatac--atatatatccaattgaagatgaaac 9835658  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 25130581 - 25130669
Alignment:
Q  181 aaaatgctgctataacaacttagccaaataaaagcatcacagttcacacaaacacaccaacaggcccaaaaaatactacaaagtggttat 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  25130581 aaaatgctgctataacaacttagccaaataaaagcatcacagttcacacaaacacaccaacaggccc-aaaaatactacatagtggttat 25130669  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 38703302 - 38703219
Alignment:
Q  48 tatgggacaaacagaaaatgaagtgttaaaagtatagtacaaaatgaattgaagtatatttgaatcacaaggaatctaaaatca 131  Q
    ||||||||||||||||||| |||||||||||||||| || | || ||||||||||||||||||||||||||||| |||||||||    
T  38703302 tatgggacaaacagaaaataaagtgttaaaagtataatatagaacgaattgaagtatatttgaatcacaaggaaactaaaatca 38703219  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 5660232 - 5660192
Alignment:
Q  10 cgaagaatattataattgttaactcatattaagcaagatat 50  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  5660232 cgaaaaatattataattgttaactcatattaagcaagatat 5660192  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 18559551 - 18559586
Alignment:
Q  15 aatattataattgttaactcatattaagcaagatat 50  Q
    ||||||||||||||||||||||||||||||||||||    
T  18559551 aatattataattgttaactcatattaagcaagatat 18559586  T

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Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 48 - 177
Target Start/End: Complemental strand, 19538943 - 19538814
Alignment:
Q  48 tatgggacaaacagaaaatgaagtgttaaaagtatagtacaaaatgaattgaagtatatttgaatcacaaggaatctaaaatcagtgatttggcaagcaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  19538943 tatgggacaaacagaaaatgaagtgttaaaagtatagtacataatgaattgaagtatatttgaatcacaaggaaactaaaatcaatgatttggcaagcaa 19538844  T
Q  148 aaaattgtgtatttgattttttatgttatc 177  Q
    ||||| ||||||||||||||||||||||||    
T  19538843 aaaatcgtgtatttgattttttatgttatc 19538814  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 19545425 - 19545390
Alignment:
Q  15 aatattataattgttaactcatattaagcaagatat 50  Q
    ||||||||||||||||||||||||||||||||||||    
T  19545425 aatattataattgttaactcatattaagcaagatat 19545390  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 25073045 - 25073010
Alignment:
Q  15 aatattataattgttaactcatattaagcaagatat 50  Q
    ||||||||||||||||||||||||||||||||||||    
T  25073045 aatattataattgttaactcatattaagcaagatat 25073010  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 25131016 - 25130981
Alignment:
Q  15 aatattataattgttaactcatattaagcaagatat 50  Q
    ||||||||||||||||||||||||||||||||||||    
T  25131016 aatattataattgttaactcatattaagcaagatat 25130981  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 40690184 - 40690150
Alignment:
Q  16 atattataattgttaactcatattaagcaagatat 50  Q
    |||||||||||||||||||||||||||||||||||    
T  40690184 atattataattgttaactcatattaagcaagatat 40690150  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 43301091 - 43301180
Alignment:
Q  181 aaaatgctgctataacaacttagccaaataaaagcatcacagttcacacaaacacaccaacaggcccaaaaaatactacaaagtggttat 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43301091 aaaatgctgctataacaacttagccaaataaaagcatcacagttcacacaaacacaccaacaggcccaaaaaatactacaaagtggttat 43301180  T

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Target: scaffold0001 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 142415 - 142326
Alignment:
Q  181 aaaatgctgctataacaacttagccaaataaaagcatcacagttcacacaaacacaccaacaggcccaaaaaatactacaaagtggttat 270  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  142415 aaaatgcttctataacaacttagccaaataaaagcatcacagttcacacaaacacaccaacaggcccaaaaaatactacaaagtggttat 142326  T

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Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 26216549 - 26216456
Alignment:
Q  48 tatgggacaaacagaaaatgaagtgttaaaagtatagtacaaaatgaattgaagtatatttgaatcacaaggaatctaaaatcagtgatttggc 141  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  26216549 tatgggacaaacagaaaatgaagtgttaaaagtatagtacagaatgaattgaagtatatttgaatcacaaggaaactaaaatcaatgatttggc 26216456  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 26223053 - 26223018
Alignment:
Q  15 aatattataattgttaactcatattaagcaagatat 50  Q
    ||||||||||||| ||||||||||||||||||||||    
T  26223053 aatattataattgctaactcatattaagcaagatat 26223018  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 10800746 - 10800836
Alignment:
Q  181 aaaatgctgctataacaacttagccaaataaaagcatcacagttcacacaaacacaccaacaggccc-aaaaaatactacaaagtggttat 270  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  10800746 aaaatgctgctgtaacaacttagccaaataaaagcatcacagttcacacaaacacaccaacaggcccaaaaaaatactacaaattggttat 10800836  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 13569347 - 13569437
Alignment:
Q  181 aaaatgctgctataacaacttagccaaataaaa-gcatcacagttcacacaaacacaccaacaggcccaaaaaatactacaaagtggttat 270  Q
    ||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13569347 aaaatactgctataacaacttagccaaataaaaagcatcaaagttcacacaaacacaccaacatgcccaaaaaatactacaaagtggttat 13569437  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 27302047 - 27302087
Alignment:
Q  10 cgaagaatattataattgttaactcatattaagcaagatat 50  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  27302047 cgaaaaatattataattgttaactcatattaagcaagatat 27302087  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 20572619 - 20572654
Alignment:
Q  15 aatattataattgttaactcatattaagcaagatat 50  Q
    ||||||||||||||||||||||||||||||||||||    
T  20572619 aatattataattgttaactcatattaagcaagatat 20572654  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 24500602 - 24500675
Alignment:
Q  197 aacttagccaaataaaagcatcacagttcacacaaacacaccaacaggcccaaaaaatactacaaagtggttat 270  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24500602 aacttagtcaaataaaagcatcacagttcacacaaacacaccaacaggcccaaaaaatactacaaagtggttat 24500675  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 24498405 - 24498445
Alignment:
Q  10 cgaagaatattataattgttaactcatattaagcaagatat 50  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  24498405 cgaaaaatattataattgttaactcatattaagcaagatat 24498445  T

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Target: scaffold0170 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 8432 - 8342
Alignment:
Q  181 aaaatgctgctataacaacttagccaaataaaagcatcacagttcacacaaacacaccaacaggc-ccaaaaaatactacaaagtggttat 270  Q
    ||||||||||||||||||||||||||||| ||||||||||||  || |||||||||||||||||| || ||||||||||||||||||||||    
T  8432 aaaatgctgctataacaacttagccaaatcaaagcatcacaggccaaacaaacacaccaacaggcgcccaaaaatactacaaagtggttat 8342  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 16368037 - 16368072
Alignment:
Q  15 aatattataattgttaactcatattaagcaagatat 50  Q
    ||||||||||||||||||||||||||||||||||||    
T  16368037 aatattataattgttaactcatattaagcaagatat 16368072  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 43941678 - 43941643
Alignment:
Q  15 aatattataattgttaactcatattaagcaagatat 50  Q
    ||||||||||||||||||||||||||||| ||||||    
T  43941678 aatattataattgttaactcatattaagctagatat 43941643  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 41679107 - 41679140
Alignment:
Q  17 tattataattgttaactcatattaagcaagatat 50  Q
    |||||||||||||||||| |||||||||||||||    
T  41679107 tattataattgttaactcctattaagcaagatat 41679140  T

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