View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15821_low_9 (Length: 397)
Name: NF15821_low_9
Description: NF15821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15821_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 94; Significance: 9e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 28294994 - 28295151
Alignment:
| Q |
19 |
gaaggaatcttggttacttttttgctacaatgttcaccatgatataagaaacataattgcattatatc-ggggggaaatcaaacaaaatcacattgatat |
117 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||| |||||| | ||||| |
|
|
| T |
28294994 |
gaaggaatcttgcttaattttttgctacaatgttcaccatgatataagaaacataattgcaatatatcagggaaaaaatcatacagaatcacgtcgatat |
28295093 |
T |
|
| Q |
118 |
tcagaaaagaaatattgcagattcacacataaacatcaacaatatttcattttctgca |
175 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
28295094 |
tcaaaaaacaaatattgcagattcacacataaacatcaacaatacttcattttttgca |
28295151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 28295180 - 28295283
Alignment:
| Q |
196 |
aaaattgaacaaagaaaaactggatctaaaatggtgcaaatgcctaattaacaaagaataactgtaatagacaatctcaaggtgaggggtgtttgatcca |
295 |
Q |
| |
|
||||||||||||| || ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
28295180 |
aaaattgaacaaa-aagaacaggatctaaaatggtgcgaatgcctaattaacaaagaataactgtaatagacaatctcaaggcgaagggtgtttgatcca |
28295278 |
T |
|
| Q |
296 |
aggca |
300 |
Q |
| |
|
||||| |
|
|
| T |
28295279 |
aggca |
28295283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 22377498 - 22377553
Alignment:
| Q |
24 |
aatcttggttacttttttgctacaatgttcaccatgatataagaaacataattgca |
79 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22377498 |
aatcttgcttacttttttgctacaatgttcaccatgatataagaaacataattgca |
22377553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 22377548 - 22377592
Alignment:
| Q |
131 |
attgcagattcacacataaacatcaacaatatttcattttctgca |
175 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||||||||||| |
|
|
| T |
22377548 |
attgcagattcacacattaacatcaacagtacttcattttctgca |
22377592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 29281791 - 29281634
Alignment:
| Q |
19 |
gaaggaatcttggttacttttttgctacaatgttcaccatgatataagaaacataattgcattatatcggggggaaa-tcaaacaaaatcacattgatat |
117 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| || |||| |||||||| ||||| |
|
|
| T |
29281791 |
gaaggaatcttgcttaattttttgctacaatgttcaccatgatataagaaacataattgcaatatattaggaaaaaaatcgaacagaatcacatcgatat |
29281692 |
T |
|
| Q |
118 |
tcagaaaagaaatattgcagattcacacataaacatcaacaatatttcattttctgca |
175 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
29281691 |
tcaaaaaataaatattgcagattcacacataaacatcaacaatacttcattttttgca |
29281634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 29281605 - 29281502
Alignment:
| Q |
196 |
aaaattgaacaaagaaaaactggatctaaaatggtgcaaatgcctaattaacaaagaataactgtaatagacaatctcaaggtgaggggtgtttgatcca |
295 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||| || |||||||||||||| |
|
|
| T |
29281605 |
aaaattgaacaaa-aaacactggatctaaaatggtgcgaatgcctaattaacaaacaataactgtaatagaaaatcccaaggcgaagggtgtttgatcca |
29281507 |
T |
|
| Q |
296 |
aggca |
300 |
Q |
| |
|
||||| |
|
|
| T |
29281506 |
aggca |
29281502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University