View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15822_high_10 (Length: 277)
Name: NF15822_high_10
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15822_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 13041285 - 13041518
Alignment:
| Q |
27 |
atggtggcccattgtctttgcttcccttagcaataagtaatatacaagaggatactcttgaaccacatcaagggaatttttctgtgtcagtggcgactac |
126 |
Q |
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| T |
13041285 |
atggtggcccattgtctttgcttcccttagcaataagtaatatacaagaggatactcttgaaccacatcaagggaatttttctgtgtcagtggcgactac |
13041384 |
T |
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| Q |
127 |
atctcttgctgctccaatatttcgaattatatccacagctattcaatatccgaagaacagtgaggagttgggtcgttgtagagggcctgaagttatttct |
226 |
Q |
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| T |
13041385 |
atctcttgctgctccaatatttcgaattatatccacagctattcaatatccgaagaacagtgaggagttgggtcgttgtagagggcctgaagttatttct |
13041484 |
T |
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| Q |
227 |
aaggttctaaattatcttctccaaactctatctt |
260 |
Q |
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| T |
13041485 |
aaggttctaaattatcttctccaaactctatctt |
13041518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 260
Target Start/End: Complemental strand, 28376828 - 28376606
Alignment:
| Q |
38 |
ttgtctttgcttcccttagcaataagtaatatacaagaggatactcttgaaccacatcaagggaatttttctgtgtcagtggcgactacatctcttgctg |
137 |
Q |
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| T |
28376828 |
ttgtctttgcttcccgtgacaataagcaatatagacgaagacactctggaaccactgcaagggaatttatctctttcttcagctaccacatctcttgcgg |
28376729 |
T |
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| Q |
138 |
ctccaatatttcgaattatatccacagctattcaatatccgaagaacagtgaggagttgggtcgttgtagagggcctgaagttatttctaaggttctaaa |
237 |
Q |
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| T |
28376728 |
ccccaatatttagaattatatccattgctattcaacatccaaggaacaatgaagagttatctcgtggcagagggcctgaggttctgtcaaaaattttgaa |
28376629 |
T |
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| Q |
238 |
ttatcttctccaaactctatctt |
260 |
Q |
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| T |
28376628 |
ttatcttctccaaactctatctt |
28376606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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