View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15822_high_17 (Length: 221)
Name: NF15822_high_17
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15822_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 43927759 - 43927956
Alignment:
| Q |
8 |
gagtgagatgaaatagatgttgaaaataacaattaccttgcttcgaacaacaatggaagtttttgcaccatggttaacaagatccaatgcaatttccata |
107 |
Q |
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| T |
43927759 |
gagtgaaatcaaatagatgttgaaaataacaattaccttgcttcgaacaacaatggaagtttttgcaccatggttaacaagatccaatgcaatttccata |
43927858 |
T |
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| Q |
108 |
ccagaattcccagacccaacaacaagaacatgttcatctttaaactctttcccattcttaaacccagttgaatgaatcactttcccagtaaaactctt |
205 |
Q |
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| T |
43927859 |
ccagaattcccagacccaacaacaagaacatgttcatctttaaactctttcccattcttaaacccagttgaatgaatcactttcccagtaaaactctt |
43927956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 43939756 - 43939853
Alignment:
| Q |
96 |
gcaatttccataccagaattcccagacccaacaacaagaacatgttcatctttaaactctttcccattcttaaacccagttgaatgaatcactttccc |
193 |
Q |
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| T |
43939756 |
gcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaactcttttccatttttgtacctagttgaatgaattactttccc |
43939853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 15608293 - 15608180
Alignment:
| Q |
85 |
caagatccaatgcaatttccataccagaattcccagacccaacaacaagaacatgtt----catctttaaactctttcccattcttaaacccagttgaat |
180 |
Q |
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| T |
15608293 |
caagatccaaagcagtttccatgccagaattcccagatccaacaaaaagaacatgttaattcatctttaaactctttctcattcttaaacccagttgaat |
15608194 |
T |
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| Q |
181 |
gaatcactttccca |
194 |
Q |
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| T |
15608193 |
gaatcacttcccca |
15608180 |
T |
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