View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15822_high_3 (Length: 451)
Name: NF15822_high_3
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15822_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1800965 - 1800742
Alignment:
| Q |
1 |
ttttgatgttaacagtgggattaaccaaggtgggttaaagaagataaaaaataaagaggtttgatagttcatctgatttgagttgagcaataacaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1800965 |
ttttgatgttaacagtgggattaaccaaggtgggttaaagaagataaaaaataaagaggtttgatagttcatctgatttgagttgagcaataacaaaaca |
1800866 |
T |
|
| Q |
101 |
gaacgaaatattaaatataatctaacaaaatgtgtacaccaaatgataacccattttgacattttctcttgacatcgttagcaccaaatgtgtacaccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1800865 |
gaacgaaatattaaatataatctaacaaaatgtgtacaccaagtgataacccattttgacattttctcttgacatcgttagcaccaaatgtgtacaccaa |
1800766 |
T |
|
| Q |
201 |
gttagcttaacatgccatgttaca |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1800765 |
gttagcttaacatgccatgttaca |
1800742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 289 - 435
Target Start/End: Complemental strand, 1800678 - 1800532
Alignment:
| Q |
289 |
gatggtaacatgtacaggatttgacacttggattatcgttggtgaggccacatcctatctttaatgacaaaaaactattgttgaaagaaacaagagttac |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1800678 |
gatggtaacatgtacaggatttgacacttggattatcgttggtgaggccacatcctatctttaatgacaaaaaactattgttgaaagaaacaagagttac |
1800579 |
T |
|
| Q |
389 |
caaacataggaatggaagggtgcctaaagtcttcatcatcagcaaag |
435 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1800578 |
caaacataggaatggaagggtgcctaaagccttcatcatcagcaaag |
1800532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 294 - 435
Target Start/End: Complemental strand, 1782893 - 1782752
Alignment:
| Q |
294 |
taacatgtacaggatttgacacttggattatcgttggtgaggccacatcctatctttaatgacaaaaaactattgttgaaagaaacaagagttaccaaac |
393 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| | |
|
|
| T |
1782893 |
taacatgcgcaggatttaacacttggatcatcattggtgaggccacatcctatctttaacgacataaaactagtgttgaaagaaacaagagttaccaagc |
1782794 |
T |
|
| Q |
394 |
ataggaatggaagggtgcctaaagtcttcatcatcagcaaag |
435 |
Q |
| |
|
| |||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
1782793 |
agaggaatggaagggtaccaaaagtcttcattatcagcaaag |
1782752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 289 - 424
Target Start/End: Complemental strand, 1776472 - 1776337
Alignment:
| Q |
289 |
gatggtaacatgtacaggatttgacacttggattatcgttggtgaggccacatcctatctttaatgacaaaaaactattgttgaaagaaacaagagttac |
388 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| |
|
|
| T |
1776472 |
gatggtaacatgcgcaggatttgacacttggatcatcgttggtgaggccacatcctatctttaatgatgaaaaactgatattgaaagaaacaagagttac |
1776373 |
T |
|
| Q |
389 |
caaacataggaatggaagggtgcctaaagtcttcat |
424 |
Q |
| |
|
||| | |||||||||||||| || ||||||||||| |
|
|
| T |
1776372 |
caagctgaggaatggaagggtaccaaaagtcttcat |
1776337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 434
Target Start/End: Complemental strand, 1771786 - 1771713
Alignment:
| Q |
361 |
aactattgttgaaagaaacaagagttaccaaacataggaatggaagggtgcctaaagtcttcatcatcagcaaa |
434 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| |||| |||||||| || |||||| | || ||||| |||||| |
|
|
| T |
1771786 |
aactattgttgaaggaaacaacagttaccaatgatagaaatggaagagtacctaaattttttatcataagcaaa |
1771713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 303 - 435
Target Start/End: Original strand, 25729816 - 25729948
Alignment:
| Q |
303 |
caggatttgacacttggattatcgttggtgaggccacatcctatctttaatgacaaaaaactattgttgaaagaaacaagagttaccaaacataggaatg |
402 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||| |
|
|
| T |
25729816 |
caggatttgacacttggattatcgttagtgaggccacatcctaactttaatgacgaaaaactattattgaaagaaacaagagttaccaagcataggtatg |
25729915 |
T |
|
| Q |
403 |
gaagggtgcctaaagtcttcatcatcagcaaag |
435 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
25729916 |
gaagggtgcctaaagtctacatcatcagcaaag |
25729948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 25729670 - 25729734
Alignment:
| Q |
153 |
attttgacattttctcttgacatcgttagcaccaaatgtgtacaccaagttagcttaacatgccat |
218 |
Q |
| |
|
||||||| |||||||||||| | | ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
25729670 |
attttgatattttctcttgagaccactagcaccaaatgtgtac-ccaagttaccttaacataccat |
25729734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 21124590 - 21124685
Alignment:
| Q |
327 |
ttggtgaggccacatcctatctttaatgacaa-aaaactattgttgaaagaaacaagagttaccaaacataggaatggaagggtgcctaaagtctt |
421 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| || ||| ||| ||| || || |||||||| |
|
|
| T |
21124590 |
ttggtgaggccacatcctatctttaatgaatataaaactattgttgaacgaaacaagagttaccaagcagagggatgaaagtgtaccaaaagtctt |
21124685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 391
Target Start/End: Complemental strand, 1673038 - 1672976
Alignment:
| Q |
330 |
gtgaggccacatcctatctttaatgacaa-aaaactattgttgaaagaaacaagagttaccaa |
391 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
1673038 |
gtgaggccacatcctatctttaatgaatacaaaactattgttgaacgaaacaagagttaccaa |
1672976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 406
Target Start/End: Complemental strand, 32315722 - 32315664
Alignment:
| Q |
348 |
tttaatgacaaaaaactattgttgaaagaaacaagagttaccaaacataggaatggaag |
406 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||||||||||||||| || ||| ||||||| |
|
|
| T |
32315722 |
tttaatgacgaaaaactatcattgaacgaaacaagagttaccaagcagagggatggaag |
32315664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University