View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15822_low_1 (Length: 641)

Name: NF15822_low_1
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15822_low_1
NF15822_low_1
[»] chr2 (7 HSPs)
chr2 (18-636)||(13945106-13945710)
chr2 (18-636)||(14086295-14086899)
chr2 (48-371)||(24992608-24992931)
chr2 (135-220)||(9509913-9509998)
chr2 (135-220)||(18655325-18655410)
chr2 (135-220)||(27166129-27166214)
chr2 (135-220)||(45018457-45018542)
[»] chr7 (10 HSPs)
chr7 (48-371)||(610287-610610)
chr7 (135-223)||(9541389-9541477)
chr7 (135-220)||(5388064-5388149)
chr7 (135-220)||(6538584-6538669)
chr7 (135-220)||(8505156-8505241)
chr7 (135-220)||(16138333-16138418)
chr7 (135-220)||(26354448-26354533)
chr7 (135-220)||(32102487-32102572)
chr7 (135-220)||(44901464-44901549)
chr7 (135-220)||(46501221-46501306)
[»] chr6 (11 HSPs)
chr6 (48-371)||(8998401-8998724)
chr6 (81-258)||(27747145-27747322)
chr6 (15-252)||(17946105-17946342)
chr6 (48-258)||(9007684-9007894)
chr6 (195-337)||(11377388-11377527)
chr6 (273-371)||(9007570-9007671)
chr6 (160-258)||(25898162-25898260)
chr6 (135-220)||(16902053-16902138)
chr6 (135-220)||(18164172-18164257)
chr6 (135-220)||(24928314-24928399)
chr6 (135-220)||(31360926-31361011)
[»] chr5 (11 HSPs)
chr5 (48-371)||(724606-724929)
chr5 (63-364)||(15326910-15327211)
chr5 (63-364)||(18711558-18711859)
chr5 (160-258)||(24296793-24296891)
chr5 (160-250)||(24416304-24416394)
chr5 (160-250)||(30450814-30450904)
chr5 (135-220)||(18383847-18383932)
chr5 (135-220)||(20951968-20952053)
chr5 (135-220)||(26198474-26198559)
chr5 (135-220)||(33943427-33943512)
chr5 (312-344)||(23915162-23915194)
[»] chr4 (6 HSPs)
chr4 (48-371)||(115703-116026)
chr4 (63-364)||(14935860-14936161)
chr4 (160-250)||(54695998-54696088)
chr4 (135-220)||(6696325-6696410)
chr4 (135-220)||(16269163-16269248)
chr4 (273-345)||(17132939-17133011)
[»] scaffold0096 (1 HSPs)
scaffold0096 (48-371)||(52570-52893)
[»] chr3 (7 HSPs)
chr3 (48-334)||(19688392-19688675)
chr3 (197-371)||(25507621-25507795)
chr3 (150-248)||(2158928-2159026)
chr3 (135-220)||(6426414-6426499)
chr3 (135-220)||(8976953-8977038)
chr3 (135-220)||(9541242-9541327)
chr3 (135-220)||(16405716-16405801)
[»] chr8 (7 HSPs)
chr8 (63-364)||(45495351-45495652)
chr8 (135-223)||(22834842-22834930)
chr8 (160-250)||(20748095-20748185)
chr8 (273-334)||(19754300-19754361)
chr8 (160-258)||(18236395-18236493)
chr8 (160-258)||(18245846-18245944)
chr8 (135-220)||(21209119-21209204)
[»] scaffold0049 (2 HSPs)
scaffold0049 (84-258)||(18656-18830)
scaffold0049 (135-223)||(84737-84825)
[»] scaffold0028 (2 HSPs)
scaffold0028 (48-258)||(85448-85658)
scaffold0028 (160-250)||(100512-100602)
[»] scaffold0021 (1 HSPs)
scaffold0021 (95-371)||(166832-167108)
[»] scaffold0500 (1 HSPs)
scaffold0500 (48-258)||(9611-9821)
[»] scaffold0313 (1 HSPs)
scaffold0313 (135-220)||(13664-13749)
[»] scaffold0003 (1 HSPs)
scaffold0003 (135-220)||(149120-149205)
[»] scaffold0141 (1 HSPs)
scaffold0141 (135-223)||(29987-30075)
[»] scaffold0058 (1 HSPs)
scaffold0058 (135-223)||(62523-62611)


Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 636
Target Start/End: Complemental strand, 13945710 - 13945106
Alignment:
Q  18 tcatcttcttcaatgatcnnnnnnngattttcaaattcttcac-attcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtat 116  Q
    ||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||            
T  13945710 tcatcttcttcaatgatctttttttgattttcaaattcttcactattcattaaattttatacgtatactttcttctacaattcttgttctta-------- 13945619  T
Q  117 aacctgtaggcttttgatgttgta-----gagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaat 211  Q
       || |||||||||| |||| ||     |||||||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||    
T  13945618 ---ctttaggcttttgttgttttaatttagagtatcccagaaatatagctttgtctgatttttaatcaaacttgcctaaattttccttattgtttaaaat 13945522  T
Q  212 gtaacaataacattgaaagatacgaaaatatgaaatgtttggatttcnnnnnnnnnnncatagttcatacgtggttttgtttaaattttttcttattgac 311  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||           ||||||||||||||| ||||||||         ||||| |||    
T  13945521 gtaacaataacattgaaagatacgaaaatatgaaatgtttggctttctttttttt---catagttcatacgtgattttgttt---------cttatcgac 13945434  T
Q  312 actttgttcaaaatatagcaagaagtgttgatgctt---gcccaaaaatatttttcaatatttagaatgatggatgcttctccaagtgcagcttggttgt 408  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  13945433 actttgttcaaaatatagcaagaagtgttgatgctttctgcccaaaaatatttttcaatatttagaatgatggatggttctccaagtgtagcttggttgt 13945334  T
Q  409 gatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaactt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13945333 gatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaactt 13945234  T
Q  509 attttgctagcattgcttcgttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacgaat 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13945233 attttgctagcattgcttcgttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatgaat 13945134  T
Q  609 cttcgtgtggtcccctttgcttctccac 636  Q
    |||| |||| ||||||||||||| ||||    
T  13945133 cttcctgtgatcccctttgcttccccac 13945106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 636
Target Start/End: Complemental strand, 14086899 - 14086295
Alignment:
Q  18 tcatcttcttcaatgatcnnnnnnngattttcaaattcttcac-attcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtat 116  Q
    ||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||            
T  14086899 tcatcttcttcaatgatctttttttgattttcaaattcttcactattcattaaattttatacgtatactttcttctacaattcttgttctta-------- 14086808  T
Q  117 aacctgtaggcttttgatgttgta-----gagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaat 211  Q
       || |||||||||| |||| ||     |||||||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||    
T  14086807 ---ctttaggcttttgttgttttaatttagagtatcccagaaatatagctttgtctgatttttaatcaaacttgcctaaattttccttattgtttaaaat 14086711  T
Q  212 gtaacaataacattgaaagatacgaaaatatgaaatgtttggatttcnnnnnnnnnnncatagttcatacgtggttttgtttaaattttttcttattgac 311  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||           ||||||||||||||| ||||||||         ||||| |||    
T  14086710 gtaacaataacattgaaagatacgaaaatatgaaatgtttggctttctttttttt---catagttcatacgtgattttgttt---------cttatcgac 14086623  T
Q  312 actttgttcaaaatatagcaagaagtgttgatgctt---gcccaaaaatatttttcaatatttagaatgatggatgcttctccaagtgcagcttggttgt 408  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14086622 actttgttcaaaatatagcaagaagtgttgatgctttctgcccaaaaatatttttcaatatttagaatgatggatggttctccaagtgtagcttggttgt 14086523  T
Q  409 gatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaactt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14086522 gatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaactt 14086423  T
Q  509 attttgctagcattgcttcgttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacgaat 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14086422 attttgctagcattgcttcgttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatgaat 14086323  T
Q  609 cttcgtgtggtcccctttgcttctccac 636  Q
    |||| |||| ||||||||||||| ||||    
T  14086322 cttcctgtgatcccctttgcttccccac 14086295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 48 - 371
Target Start/End: Complemental strand, 24992931 - 24992608
Alignment:
Q  48 tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc 147  Q
    |||| ||| ||| |||||| |||||||||  | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| |    
T  24992931 tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac 24992832  T
Q  148 ctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaat 247  Q
    | |||||||||||||||||||| ||| ||||||| ||  ||   || ||||| ||||||||||| |||||||| |||  ||| ||| ||||||| |||||    
T  24992831 caagaaatatagctttgtctgactttgaatcaaatttttctaggttatctttgttgtttaaaatataacaatagcatccaaaaatatgaaaataagaaat 24992732  T
Q  248 gtttggatttcnnnnnnnnnnncatagttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaagaagtgttgat-gct 346  Q
    || ||| ||||           || |||||||||| |||||||||||||  |||||||||||| ||| |||| ||||| |||||||| || || || |||    
T  24992731 gtctggctttc---tttctttccagagttcatacggggttttgtttaaaaattttcttattgaaactctgtttaaaatgtagcaagatgtatttatggct 24992635  T
Q  347 --tgcccaaaaatatttttcaatattt 371  Q
      ||||||||||||||| |||| ||||    
T  24992634 tctgcccaaaaatatttctcaacattt 24992608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 9509913 - 9509998
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  9509913 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 9509998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 18655410 - 18655325
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  18655410 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 18655325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 27166129 - 27166214
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| | |||||| |||||    
T  27166129 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagaatgtagcaata 27166214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 45018542 - 45018457
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  45018542 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 45018457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 48 - 371
Target Start/End: Complemental strand, 610610 - 610287
Alignment:
Q  48 tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc 147  Q
    |||| ||| ||| |||||| |||||||||  | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| |    
T  610610 tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac 610511  T
Q  148 ctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaat 247  Q
    | |||||||||||||||||||||||| ||||||| || |||   || ||||| ||||||||||| ||||||||||||  ||| ||| ||||||| |||||    
T  610510 caagaaatatagctttgtctgattttgaatcaaattttcctaggttatctttgttgtttaaaatataacaataacatccaaaaatatgaaaataagaaat 610411  T
Q  248 gtttggatttcnnnnnnnnnnncatagttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaagaagtgttgat-gct 346  Q
    || ||| ||||           || |||||||||| |||||||||||||  |||||||||||| ||| |||| ||||| |||||||| || || || |||    
T  610410 gtctggctttc---tttctttccagagttcatacggggttttgtttaaaacttttcttattgaaactctgtttaaaatgtagcaagatgtatttatggct 610314  T
Q  347 --tgcccaaaaatatttttcaatattt 371  Q
      ||||||||||||||| |||| ||||    
T  610313 tctgcccaaaaatatttctcaacattt 610287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 9541389 - 9541477
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataaca 223  Q
    |||||||||||||||| ||| |||||||| ||||||||  |||||||||| ||  | || ||||||||||| |  ||||||||||||||    
T  9541389 gttgtagagtatcctaaaaagatagctttatctgatttagaatcaaacttacccaatttttctttattgttcagtatgtaacaataaca 9541477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 5388064 - 5388149
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  5388064 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 5388149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 6538669 - 6538584
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  6538669 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 6538584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 8505241 - 8505156
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  8505241 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 8505156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 16138333 - 16138418
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  16138333 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 16138418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 26354448 - 26354533
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  26354448 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 26354533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 32102572 - 32102487
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  32102572 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 32102487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 44901549 - 44901464
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  44901549 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 44901464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 46501306 - 46501221
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  46501306 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 46501221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 48 - 371
Target Start/End: Complemental strand, 8998724 - 8998401
Alignment:
Q  48 tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc 147  Q
    |||| ||| ||| |||||| |||||||||  | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| |    
T  8998724 tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac 8998625  T
Q  148 ctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaat 247  Q
    | |||||||||||||||||||||||| ||||||| || |||   || ||||| ||||||||||| ||||||||||||  ||| ||| ||||||| |||||    
T  8998624 caagaaatatagctttgtctgattttgaatcaaattttcctaggttatctttgttgtttaaaatataacaataacatccaaaaatatgaaaataagaaat 8998525  T
Q  248 gtttggatttcnnnnnnnnnnncatagttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaagaagtgttgat-gct 346  Q
    || ||| ||||           || |||||||||| |||||||||||||  |||||||||||| ||| |||| ||||| |||||||| || || || |||    
T  8998524 gtctggctttc---tttctttccagagttcatacggggttttgtttaaaacttttcttattgaaactctgtttaaaatgtagcaagatgtatttatggct 8998428  T
Q  347 --tgcccaaaaatatttttcaatattt 371  Q
      ||||||||||||||| |||| ||||    
T  8998427 tctgcccaaaaatatttctcaacattt 8998401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 81 - 258
Target Start/End: Original strand, 27747145 - 27747322
Alignment:
Q  81 atactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatcctagaaatatagctttgtctgatttttaatcaa 180  Q
    ||||||||||| | ||||||||||||||||||||| |  ||||| ||||||||||| | ||| ||||| | ||||||  |||||||||||||| ||||||    
T  27747145 atactttcttcaagaactcttgttcttaaattgtaaattctgtatgcttttgatgtggaagaatatcccaaaaatattcctttgtctgattttgaatcaa 27747244  T
Q  181 acttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtttggatttc 258  Q
    |||| |||  ||| ||||| ||||||| ||| || |||||||||  ||||||  ||||||||||||||||||| ||||    
T  27747245 actttcctagattatctttgttgtttagaatatagcaataacatccaaagatgtgaaaatatgaaatgtttggctttc 27747322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 17946342 - 17946105
Alignment:
Q  15 tcatcatcttcttcaatgatcnnnnnnngattttcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgt 114  Q
    ||||| |||||||||||||||       ||||||||| ||| ||| |||||| |||||| ||| ||||||||||||||| | |||||||||||| ||| |    
T  17946342 tcatcttcttcttcaatgatcttgttttgattttcaagttcctcaaattcatcaaatttgatatgtatactttcttctagagctcttgttcttagattat 17946243  T
Q  115 ataacctgtaggcttttgatgttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgta 214  Q
    | |  || |||||||||||||| |  || ||||| | |||||  ||||||||||||||| | |||||||| ||  |  ||||||| ||||| || |||||    
T  17946242 aaattctataggcttttgatgtagatgaatatcccaaaaataatgctttgtctgattttgagtcaaactttcccaagatgtctttgttgttcaagatgta 17946143  T
Q  215 acaataacattgaaagatacgaaaatatgaaatgtttg 252  Q
    |  |||||||  ||| ||| ||||||||||||||||||    
T  17946142 aagataacatccaaaaatatgaaaatatgaaatgtttg 17946105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 48 - 258
Target Start/End: Complemental strand, 9007894 - 9007684
Alignment:
Q  48 tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc 147  Q
    |||| ||| ||| |||||| |||||||||  | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| |    
T  9007894 tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac 9007795  T
Q  148 ctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaat 247  Q
    | |||||||||||||||||||| ||| ||||||| || |||   || ||||| ||||||||||| ||||||||||||  ||| ||| ||||||| |||||    
T  9007794 caagaaatatagctttgtctgactttgaatcaaattttcctaggttatctttgttgtttaaaatataacaataacatccaaaaatatgaaaataagaaat 9007695  T
Q  248 gtttggatttc 258  Q
    || ||| ||||    
T  9007694 gtctggctttc 9007684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 337
Target Start/End: Complemental strand, 11377527 - 11377388
Alignment:
Q  195 tctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtttggatttcnnnnnnnnnnncatagttcatacgtggttttgttta 294  Q
    ||||| ||||||| |||||| |||||||||  ||||||  ||||||||||||||||||| ||||           || |||||||||| |||||||||||    
T  11377527 tctttgttgtttagaatgtagcaataacatccaaagatgtgaaaatatgaaatgtttggctttcttccttta---cagagttcatacggggttttgttta 11377431  T
Q  295 aattttttcttattgacactttgttcaaaatatagcaagaagt 337  Q
    ||    |||||||||| |||||||| || ||||||||||||||    
T  11377430 aaaaaattcttattgaaactttgtttaagatatagcaagaagt 11377388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 371
Target Start/End: Complemental strand, 9007671 - 9007570
Alignment:
Q  273 agttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaagaagtgttgat-gct--tgcccaaaaatatttttcaatat 369  Q
    |||||||||| |||||||||||||  |||||||||||| ||| | || ||||| |||||||| || || || |||  ||||||||||||||| |||| ||    
T  9007671 agttcatacggggttttgtttaaaacttttcttattgaaactctatttaaaatgtagcaagatgtatttatggcttctgcccaaaaatatttctcaacat 9007572  T
Q  370 tt 371  Q
    ||    
T  9007571 tt 9007570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 25898260 - 25898162
Alignment:
Q  160 ctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtttggatttc 258  Q
    |||||||||||||| ||||||| || ||| | || |||||||  ||||||||||| ||| ||||   ||||||  ||||||| ||||||||||| ||||    
T  25898260 ctttgtctgattttgaatcaaattttcctaagttttctttatcatttaaaatgtagcaaaaacagccaaagatgtgaaaataagaaatgtttggttttc 25898162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 16902138 - 16902053
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  16902138 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 16902053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 18164257 - 18164172
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  18164257 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 18164172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 24928314 - 24928399
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  24928314 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 24928399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 31361011 - 31360926
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  31361011 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 31360926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 48 - 371
Target Start/End: Original strand, 724606 - 724929
Alignment:
Q  48 tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc 147  Q
    |||| ||| ||| |||||| |||||||||  | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| |    
T  724606 tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac 724705  T
Q  148 ctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaat 247  Q
    | |||||||||||||||||||||||| ||||||| || |||   || ||||| ||||||||||| ||||||||||||  ||| ||| ||||||| |||||    
T  724706 cgagaaatatagctttgtctgattttgaatcaaattttcctaggttatctttgttgtttaaaatataacaataacatccaaaaatatgaaaataagaaat 724805  T
Q  248 gtttggatttcnnnnnnnnnnncatagttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaagaagtgttgat-gct 346  Q
    || ||| ||||           || |||||||||| |||||||||||||  |||||||||||| ||| |||| ||||| |||||||| || || || |||    
T  724806 gtctggctttc---tttctttccagagttcatacggggttttgtttaaaacttttcttattgaaactctgtttaaaatgtagcaagatgtatttatggct 724902  T
Q  347 --tgcccaaaaatatttttcaatattt 371  Q
      ||||||||||||||| |||| ||||    
T  724903 tctgcccaaaaatatttctcaacattt 724929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 63 - 364
Target Start/End: Original strand, 15326910 - 15327211
Alignment:
Q  63 tcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatcctagaaatatagctt 162  Q
    |||| |||||| ||| | ||||||||||||| |  ||||||||||| |||||| |  || || |||||||| || | ||| ||||| | |||||| ||||    
T  15326910 tcatcaaatttgatatgcatactttcttctagagttcttgttcttagattgtaaattctatatgcttttgaggtagaagaatatcccaaaaatattgctt 15327009  T
Q  163 tgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtttggatttcnnnn 262  Q
    ||||||| ||| | ||||| || ||  || | |||||||||||||  ||||| ||||||||   ||| ||| ||||||||||||||||||| ||||        
T  15327010 tgtctgactttgagtcaaatttccccaaagtatctttattgtttaggatgtagcaataacagccaaaaatatgaaaatatgaaatgtttggctttc---t 15327106  T
Q  263 nnnnnnncatagttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaagaagtgttgat-gct--tgcccaaaaatat 359  Q
           || |||||||||| |||||||||||||  |||||| ||||| ||| ||||||| ||||||||||| || || || |||  |||||||||||||    
T  15327107 tcctttccagagttcatacggggttttgtttaaaacttttctaattgaaactctgttcaagatatagcaagaggtatttatggcttctgcccaaaaatat 15327206  T
Q  360 ttttc 364  Q
    |||||    
T  15327207 ttttc 15327211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 63 - 364
Target Start/End: Complemental strand, 18711859 - 18711558
Alignment:
Q  63 tcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatcctagaaatatagctt 162  Q
    |||| |||||| ||| | ||||||||||||| |  ||||||||||| |||||| |  || || |||||||| || | ||| ||||| | |||||| ||||    
T  18711859 tcatcaaatttgatatgcatactttcttctagagttcttgttcttagattgtaaattctatatgcttttgaggtagaagaatatcccaaaaatattgctt 18711760  T
Q  163 tgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtttggatttcnnnn 262  Q
    ||||||| ||| | ||||| || ||  |  | |||||||||||||  ||||| ||||||||   ||| ||| ||||||||||||||||||| ||||        
T  18711759 tgtctgactttgagtcaaatttccccaaggtatctttattgtttaggatgtagcaataacagccaaatatatgaaaatatgaaatgtttggctttc---t 18711663  T
Q  263 nnnnnnncatagttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaagaagtgttgat-gct--tgcccaaaaatat 359  Q
           || |||||||||| |||||||||||||  |||||| ||||| ||| ||||||| ||||||||||| || || || |||  |||||||||||||    
T  18711662 tcctttccaaagttcatacggggttttgtttaaaacttttctaattgaaactctgttcaagatatagcaagaggtatttatggcttctgcccaaaaatat 18711563  T
Q  360 ttttc 364  Q
    |||||    
T  18711562 ttttc 18711558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 24296793 - 24296891
Alignment:
Q  160 ctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtttggatttc 258  Q
    |||||||||||||| ||||||| || ||| | || |||||||  ||||||||||| ||| ||||   ||||||  ||||||| ||||||||||| ||||    
T  24296793 ctttgtctgattttgaatcaaattttcctaagttttctttatcatttaaaatgtagcaaaaacagccaaagatgtgaaaataagaaatgtttggttttc 24296891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 24416394 - 24416304
Alignment:
Q  160 ctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtt 250  Q
    |||| ||||||||| ||||||| || |||  ||| |||||||  |||||||| ||||||||||||  ||| ||| |||||||||| |||||    
T  24416394 ctttatctgattttgaatcaaattttcctagattttctttatcatttaaaatataacaataacatccaaaaatatgaaaatatgagatgtt 24416304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 30450814 - 30450904
Alignment:
Q  160 ctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtt 250  Q
    |||| ||||||||| ||||||| || |||  ||| |||||||  |||||||| ||||||||||||  ||| ||| |||||||||| |||||    
T  30450814 ctttatctgattttgaatcaaattttcctagattttctttatcatttaaaatataacaataacatccaaaaatatgaaaatatgagatgtt 30450904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 18383932 - 18383847
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  18383932 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 18383847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 20952053 - 20951968
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| | |||||| |||||    
T  20952053 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagaatgtagcaata 20951968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 26198474 - 26198559
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  26198474 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 26198559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 33943512 - 33943427
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  33943512 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 33943427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 23915162 - 23915194
Alignment:
Q  312 actttgttcaaaatatagcaagaagtgttgatg 344  Q
    ||||||| |||||||||||||||||||||||||    
T  23915162 actttgtccaaaatatagcaagaagtgttgatg 23915194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 48 - 371
Target Start/End: Complemental strand, 116026 - 115703
Alignment:
Q  48 tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc 147  Q
    |||| ||| ||| |||||| |||||||||  | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| |    
T  116026 tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac 115927  T
Q  148 ctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaat 247  Q
    | |||||||||||||||||||||||| ||||||| || |||   || ||||| ||||||||||| ||||||||||||  ||| ||| ||||||| |||||    
T  115926 caagaaatatagctttgtctgattttgaatcaaattttcctaggttatctttgttgtttaaaatataacaataacatccaaaaatatgaaaataagaaat 115827  T
Q  248 gtttggatttcnnnnnnnnnnncatagttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaagaagtgttgat-gct 346  Q
    || ||| ||||           || |||||||||| |||||||||||||  |||||||||||| ||| |||| ||||| |||||||| || || || |||    
T  115826 gtctggctttc---tttctttccagagttcatacggggttttgtttaaaacttttcttattgaaactctgtttaaaatgtagcaagatgtatttatggct 115730  T
Q  347 --tgcccaaaaatatttttcaatattt 371  Q
      ||||||||||||||| |||| ||||    
T  115729 tctgcccaaaaatatttctcaacattt 115703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 63 - 364
Target Start/End: Complemental strand, 14936161 - 14935860
Alignment:
Q  63 tcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatcctagaaatatagctt 162  Q
    |||| |||||| ||| | |||||||||| || |  ||||||||||| |||||| |  || || ||||||||||| | ||| ||||| | |||||| ||||    
T  14936161 tcatcaaatttgatatgcatactttcttgtagagttcttgttcttagattgtagattctatatgcttttgatgtagaagaatatcccaaaaatattgctt 14936062  T
Q  163 tgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtttggatttcnnnn 262  Q
    ||||||| ||| | ||||| || ||  |  | |||||||||||||| ||||| ||||||||   ||| ||| ||||||||||||||||||| ||||        
T  14936061 tgtctgactttgagtcaaatttccccaaggtatctttattgtttaagatgtagcaataacagccaaatatatgaaaatatgaaatgtttggctttc---t 14935965  T
Q  263 nnnnnnncatagttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaagaagtgttgatgc---ttgcccaaaaatat 359  Q
           || |||||||||| |||||| ||||||  |||||| ||||| ||| ||||||| ||||||||||| || || ||||    |||||||||||||    
T  14935964 tcctttccagagttcatacggggttttttttaaaacttttctaattgaaactctgttcaagatatagcaagaggtatttatgccttctgcccaaaaatat 14935865  T
Q  360 ttttc 364  Q
    |||||    
T  14935864 ttttc 14935860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 54695998 - 54696088
Alignment:
Q  160 ctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtt 250  Q
    |||| ||||||||| ||||||| || |||  ||| |||||||  |||||||| ||||||||||||  ||| ||| |||||||||| |||||    
T  54695998 ctttatctgattttgaatcaaattttcctagattttctttatcatttaaaatataacaataacatccaaaaatatgaaaatatgagatgtt 54696088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 6696410 - 6696325
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  6696410 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 6696325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 16269248 - 16269163
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  16269248 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 16269163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 17133011 - 17132939
Alignment:
Q  273 agttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaagaagtgttgatgc 345  Q
    |||||||| ||||||||||| ||| | ||||||||||  ||| |||| | |||||| |||||| |||||||||    
T  17133011 agttcatatgtggttttgttcaaaatctttcttattggaactatgtttagaatatatcaagaattgttgatgc 17132939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 48 - 371
Target Start/End: Complemental strand, 52893 - 52570
Alignment:
Q  48 tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc 147  Q
    |||| ||| ||| |||||| |||||||||  | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| |    
T  52893 tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctatatgcttttgaagtagcagagtaac 52794  T
Q  148 ctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaat 247  Q
    | |||||||||||||||||||||||| ||||||| || |||   || ||||| ||||||||||| |||||||| |||  ||| ||| ||||||| |||||    
T  52793 caagaaatatagctttgtctgattttgaatcaaattttcctaggttatctttgttgtttaaaatataacaatatcatccaaaaatatgaaaataagaaat 52694  T
Q  248 gtttggatttcnnnnnnnnnnncatagttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaagaagtgttgatg-ct 346  Q
    || ||| ||||           || |||||||||| |||||||||||||  |||||||||||| ||| |||| ||||| |||||||| || || ||| ||    
T  52693 gtctggctttc---tttctttccagagttcatacggggttttgtttaaaacttttcttattgaaactctgtttaaaatgtagcaagatgtatttatgtct 52597  T
Q  347 --tgcccaaaaatatttttcaatattt 371  Q
      ||||||||||||||| |||| ||||    
T  52596 tctgcccaaaaatatttctcaacattt 52570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 48 - 334
Target Start/End: Complemental strand, 19688675 - 19688392
Alignment:
Q  48 tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc 147  Q
    |||| ||| ||| |||||| |||||||||  | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| ||   |||||| |    
T  19688675 tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtaacagagtaac 19688576  T
Q  148 ctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaat 247  Q
    | |||||||||||||||||||| ||| ||||||| || |||   || | ||| ||||||||||| ||||||||||||  ||| ||| ||||||| |||||    
T  19688575 caagaaatatagctttgtctgactttgaatcaaattttcctaggttatatttgttgtttaaaatataacaataacatccaaaaatatgaaaataagaaat 19688476  T
Q  248 gtttggatttcnnnnnnnnnnncatagttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaaga 334  Q
    || ||| ||||           || |||||||||| |||||||||||||  |||||||||||| ||| |||| ||||| ||||||||    
T  19688475 gtctggctttc---tttctttccagagttcatacggggttttgtttaaaacttttcttattgaaactctgtttaaaatgtagcaaga 19688392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 197 - 371
Target Start/End: Original strand, 25507621 - 25507795
Alignment:
Q  197 tttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtttggatttcnnnnnnnnnnncatagttcatacgtggttttgtttaaa 296  Q
    ||||||||| ||||||||||||||||||| ||||||| |||| |||||||||||| | ||||           || |||||||||| |||||||||||||    
T  25507621 tttattgttcaaaatgtaacaataacattcaaagatatgaaagtatgaaatgtttagctttc---ttcctttccagagttcatacggggttttgtttaaa 25507717  T
Q  297 ttttttcttattgacactttgttcaaaatatagcaagaagtgttga-tgct--tgcccaaaaatatttttcaatattt 371  Q
      |||||||||||| ||| ||||||| ||||||||||| || || | | ||  |||||||||||||||||||| ||||    
T  25507718 acttttcttattgaaactctgttcaagatatagcaagaggtatttatttcttctgcccaaaaatatttttcaacattt 25507795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 2159026 - 2158928
Alignment:
Q  150 agaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatg 248  Q
    ||||| |||||||||||||| ||  | |||||||| |   |||| ||||| ||||| ||||||||||||||||||  ||||||| |||| |||| ||||    
T  2159026 agaaaaatagctttgtctgacttagagtcaaacttactcaaattatctttgttgttcaaaatgtaacaataacatccaaagatatgaaagtatgcaatg 2158928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 6426499 - 6426414
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  6426499 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 6426414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 8977038 - 8976953
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  8977038 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 8976953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 9541327 - 9541242
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  9541327 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 9541242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 16405801 - 16405716
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  16405801 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 16405716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 63 - 364
Target Start/End: Original strand, 45495351 - 45495652
Alignment:
Q  63 tcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatcctagaaatatagctt 162  Q
    |||| |||||| ||| | ||||||||||||| |  ||||||||||| |||||| |  || || ||||||||||| | ||| ||||| | |||||| ||||    
T  45495351 tcatcaaatttgatatgcatactttcttctagagttcttgttcttagattgtagattctatatgcttttgatgtagaagaatatcccaaaaatattgctt 45495450  T
Q  163 tgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtttggatttcnnnn 262  Q
    ||||||| ||| | ||||| || ||  |  | |||||||||||||| ||||| ||||||||   ||| ||| ||||||||||||||||||| ||||        
T  45495451 tgtctgactttgagtcaaatttccccaaggtatctttattgtttaagatgtagcaataacagccaaatatatgaaaatatgaaatgtttggttttc---t 45495547  T
Q  263 nnnnnnncatagttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaagaagtgttgat-gct--tgcccaaaaatat 359  Q
           || |||||||||| |||||||||||||  |||||| ||||| ||| ||||||| ||||||||||| || || || |||  |||||||||||||    
T  45495548 tcctttccagagttcatacggggttttgtttaaaacttttctaattgaaactctgttcaagatatagcaagaggtatttatggcttctgcccaaaaatat 45495647  T
Q  360 ttttc 364  Q
    |||||    
T  45495648 ttttc 45495652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 22834930 - 22834842
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataaca 223  Q
    |||||||||||||||| ||| |||||||| |||||||| | ||||||||| ||  | || ||||||||||| | |||||| ||||||||    
T  22834930 gttgtagagtatcctaaaaagatagctttatctgatttatgatcaaacttacccaatttttctttattgttcagaatgtagcaataaca 22834842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 20748185 - 20748095
Alignment:
Q  160 ctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtt 250  Q
    |||| ||||||||| ||||||||||  ||  ||| |||||||| |||||||| ||||||||||||  ||| ||| |||||||||| |||||    
T  20748185 ctttatctgattttgaatcaaacttttctagattttctttattatttaaaatataacaataacatccaaaaatatgaaaatatgagatgtt 20748095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 19754361 - 19754300
Alignment:
Q  273 agttcatacgtggttttgtttaaattttttcttattgacactttgttcaaaatatagcaaga 334  Q
    |||||||||| |||||||||||||  |||||||||||| ||| | || ||||||||||||||    
T  19754361 agttcatacggggttttgtttaaaacttttcttattgagactctatttaaaatatagcaaga 19754300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 18236493 - 18236395
Alignment:
Q  160 ctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtttggatttc 258  Q
    |||||||||||||| ||||||| || ||| | || |||||||  ||||||||||| ||| ||||   ||||||  ||||||| ||||||||||| ||||    
T  18236493 ctttgtctgattttgaatcaaattttcctaagttttctttatcatttaaaatgtagcaaaaacagccaaagatgtgaaaataagaaatgtttggttttc 18236395  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 18245944 - 18245846
Alignment:
Q  160 ctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtttggatttc 258  Q
    |||||||||||||| ||||||| || ||| | || |||||||  ||||||||||| ||| ||||   ||||||  ||||||| ||||||||||| ||||    
T  18245944 ctttgtctgattttgaatcaaattttcctaagttttctttatcatttaaaatgtagcaaaaacagccaaagatgtgaaaataagaaatgtttggttttc 18245846  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 21209119 - 21209204
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  |||||||||||    
T  21209119 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaata 21209204  T

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Target: scaffold0049 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 84 - 258
Target Start/End: Complemental strand, 18830 - 18656
Alignment:
Q  84 ctttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatcctagaaatatagctttgtctgatttttaatcaaact 183  Q
    |||||||| | ||||||||||||||||||||| |  ||||| ||||||||||| | ||| ||||| | ||||||  |||||||||||||| | |||||||    
T  18830 ctttcttcaagaactcttgttcttaaattgtaaattctgtaagcttttgatgtggaagaatatcccaaaaatattcctttgtctgattttgagtcaaact 18731  T
Q  184 tgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtttggatttc 258  Q
    | ||  || | ||| | ||||||| ||| || ||||| |||  ||||||  ||||||||||||||||||| ||||    
T  18730 ttcccaaactatctctgttgtttagaatatagcaatagcatccaaagatgtgaaaatatgaaatgtttggctttc 18656  T

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Target: scaffold0049; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 84737 - 84825
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataaca 223  Q
    |||||||||||||||| ||| |||||| | ||||||||   ||||||||| ||  |||| ||||||||||| |  || |||||||||||    
T  84737 gttgtagagtatcctaaaaagatagctatatctgatttaggatcaaacttacccaaattttctttattgttcagtatataacaataaca 84825  T

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Target: scaffold0028 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 48 - 258
Target Start/End: Complemental strand, 85658 - 85448
Alignment:
Q  48 tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc 147  Q
    |||| ||| ||| |||||| |||||||||  | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| |    
T  85658 tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac 85559  T
Q  148 ctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaat 247  Q
    | |||||||||||||||||||| ||| ||||||| ||  ||   || ||||| ||||||||||| |||||||| |||  ||| ||| |||| || |||||    
T  85558 caagaaatatagctttgtctgactttgaatcaaatttttctaggttctctttgttgtttaaaatataacaatagcatccaaaaatatgaaattaagaaat 85459  T
Q  248 gtttggatttc 258  Q
    |||||| ||||    
T  85458 gtttggctttc 85448  T

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Target: scaffold0028; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 100512 - 100602
Alignment:
Q  160 ctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtt 250  Q
    |||| ||||||||| ||||||| || |||  ||| |||||||  |||||||| ||||||||||||  ||| ||| |||||||||| |||||    
T  100512 ctttatctgattttgaatcaaattttcctagattttctttatcatttaaaatataacaataacatccaaaaatatgaaaatatgagatgtt 100602  T

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Target: scaffold0021 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 95 - 371
Target Start/End: Complemental strand, 167108 - 166832
Alignment:
Q  95 aactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattg 194  Q
    ||||||||||||||||||||| |  ||||| ||||||||||| | ||| ||||| | ||||||  |||| |||||||||   |||||||| |    | |     
T  167108 aactcttgttcttaaattgtagattctgtaagcttttgatgtggaagaatatcccaaaaatattcctttatctgattttgggtcaaactttctcagacta 167009  T
Q  195 tctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaatgtttggatttcnnnnnnnnnnncatagttcatacgtggttttgttta 294  Q
    ||||| ||||||| ||| || |||||||||  ||||||  ||||||||||||||||||| ||||           || |||||||| | |||||||||||    
T  167008 tctttgttgtttagaatatagcaataacatccaaagatgtgaaaatatgaaatgtttggctttctccctttc---cagagttcatatggggttttgttta 166912  T
Q  295 aattttttcttattgacactttgttcaaaatatagcaagaagtgttgatgct---tgcccaaaaatatttttcaatattt 371  Q
    ||  |||||||||||| ||| |||| || |||||||||||||| || ||| |   |||||||||||| ||||||| ||||    
T  166911 aaacttttcttattgaaactctgtttaagatatagcaagaagtatttatggtttctgcccaaaaatacttttcaacattt 166832  T

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Target: scaffold0500 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 48 - 258
Target Start/End: Complemental strand, 9821 - 9611
Alignment:
Q  48 tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc 147  Q
    |||| ||| ||| |||||| |||||||||  | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| ||    ||||| |    
T  9821 tcaagttcctcaaattcatcaaattttatgtgcatactttcttctataacttttgttctcaagttatacaccctataagcttttgaagtatctgagtaac 9722  T
Q  148 ctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataacattgaaagatacgaaaatatgaaat 247  Q
    | |||||||||||||||||||| ||| ||||||| || |||   || ||||| ||||||||||| |||||||  |||  ||| ||| ||||||| |||||    
T  9721 caagaaatatagctttgtctgactttgaatcaaattttcctaggttatctttgttgtttaaaatataacaattgcatccaaaaatatgaaaataagaaat 9622  T
Q  248 gtttggatttc 258  Q
    |||||| ||||    
T  9621 gtttggctttc 9611  T

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Target: scaffold0313 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 13749 - 13664
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| | |||||| |||||    
T  13749 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagaatgtagcaata 13664  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 149205 - 149120
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaata 220  Q
    |||||||||||||||| ||| |||||||| ||||||||   ||||||||| ||  | || ||||||||||| | |||||| |||||    
T  149205 gttgtagagtatcctaaaaagatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagaatgtagcaata 149120  T

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Target: scaffold0141 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 30075 - 29987
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataaca 223  Q
    |||||||||||||||| ||  |||||||| ||||||||   ||||||||| ||  | || ||||||||||| |  ||||||||||||||    
T  30075 gttgtagagtatcctaaaacgatagctttatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaataaca 29987  T

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Target: scaffold0058 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 62523 - 62611
Alignment:
Q  135 gttgtagagtatcctagaaatatagctttgtctgatttttaatcaaacttgcctgaattgtctttattgtttaaaatgtaacaataaca 223  Q
    |||||||||||||||| ||| |||||| | ||||||||   ||||||||| ||  | || ||||||||||| |  ||||||||||||||    
T  62523 gttgtagagtatcctaaaaagatagctatatctgatttaggatcaaacttacccaatttttctttattgttcagtatgtaacaataaca 62611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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