View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15822_low_10 (Length: 320)
Name: NF15822_low_10
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15822_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 1343026 - 1343325
Alignment:
| Q |
17 |
cacagtcggtgtaaactgattttacatagacgtcaaatgagaatccaatatttaagttattttaaaatatggttacaaagtgggtttacgtaacaattga |
116 |
Q |
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|||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1343026 |
cacagtcggtgtgaactgattttacgtggacgtcaaatgagaatccaatatttaagttattttaaaatatggttacaaagtgggtttacgtaacaattga |
1343125 |
T |
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| Q |
117 |
tgagttcttattggatatcagtgtaaaactaattaatttacgctgacagtatatctc--ttaaactcttaaataattgtaataagaaaaacagaagctac |
214 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
1343126 |
tgagttcttattagatatcagtgtaaaactaattaatttacgctgacagtatatctcttttaaactcttaaataattgtaataagaaaaacagcagctac |
1343225 |
T |
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| Q |
215 |
atatagtcaaactaac--nnnnnnnnngatagtcaaactaacatttataacaaaagcttacctgggccccttgacggactctaatatcagtccctatgct |
312 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1343226 |
atatagtcaaactaacaaaaaaaaaaagatagtcaaactaacatttataacaaaagcttacctgggccccttgacggactctaatatcagtccctttgct |
1343325 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 150
Target Start/End: Original strand, 9204333 - 9204366
Alignment:
| Q |
117 |
tgagttcttattggatatcagtgtaaaactaatt |
150 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
9204333 |
tgagttcttattggatgtcagtgtaaaactaatt |
9204366 |
T |
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