View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15822_low_11 (Length: 314)
Name: NF15822_low_11
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15822_low_11 |
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| [»] scaffold0240 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 139 - 296
Target Start/End: Original strand, 34387511 - 34387668
Alignment:
| Q |
139 |
cgcgagatatttgatgaatacctcaattctattgaggttgaagacaatcaagatgccaaatcaggctattcaatcacctttaactttgatgaaaatccgt |
238 |
Q |
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| T |
34387511 |
cgcgagatatttgatgagtacctcaattctattgaggttgaagacaatcaagatgccaaatcaggctattcaatcacctttaactttgatgaaaatccat |
34387610 |
T |
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| Q |
239 |
attttgataatccaagccttgcaaagtctcttaccttccatgaaggaaaacttaaaga |
296 |
Q |
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| T |
34387611 |
attttgataatccaagccttgcaaagtctcttaccttccatgaaggaaaacttaaaga |
34387668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 165 - 296
Target Start/End: Complemental strand, 21396081 - 21395950
Alignment:
| Q |
165 |
ttctattgaggttgaagacaatcaagatgccaaatcaggctattcaatcacctttaactttgatgaaaatccgtattttgataatccaagccttgcaaag |
264 |
Q |
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| T |
21396081 |
ttctattgaggttgaagataatcaagatgttagtacagcctattcaatcacctttaactttgatgacaatccttattttgataaaccaagcattgcaaag |
21395982 |
T |
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| Q |
265 |
tctcttaccttccatgaaggaaaacttaaaga |
296 |
Q |
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| T |
21395981 |
tcttttacctaccatgaaggaaaactgaaaga |
21395950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 43 - 267
Target Start/End: Original strand, 10201 - 10426
Alignment:
| Q |
43 |
tgataagcgcggggaacttctcaagtctattcccaaattctggtcccgtgcttttacggcccatccaatccttgctaggcaattgatca-caaggaccgc |
141 |
Q |
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| T |
10201 |
tgataaacgcgggaaagttctcaagactgttcctaaattttggctacatgcttttacggcccatccaatcattgtcaaccttttgaacaacaaggatcac |
10300 |
T |
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| Q |
142 |
gagatatttgatgaatacctcaattctattgaggttgaagacaatcaagatgccaaatcaggctattcaatcacctttaactttgatgaaaatccgtatt |
241 |
Q |
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| T |
10301 |
gagatttttgatgagtatcttagttctattgaggttgaagataatcaagatgttagtacagcctattcaatcacctttaactttaatgacaatgcctatt |
10400 |
T |
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| Q |
242 |
ttgataatccaagccttgcaaagtct |
267 |
Q |
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| T |
10401 |
ttgataatcaaagcattgcaaagtct |
10426 |
T |
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