View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15822_low_13 (Length: 266)
Name: NF15822_low_13
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15822_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 13041263 - 13041008
Alignment:
| Q |
1 |
cgacaggtcgcattcgtgtagcaacatggactggcccaagaacctcagcaggacgtcgaagcattcctgaaacataataaaggaaccataacgtgaatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13041263 |
cgacaggtcgcattcgtgtagcaacatggactggcccaagaacctcagcaggacgtcgaagcattcctgaaacataataaaggaaccataacgtgaatgg |
13041164 |
T |
|
| Q |
101 |
acaataatgtaacatatttttaaaccgtgatgcataaaagaaatttaattgtggtctagtgataaatataaagcaatcaattaacaaacttgaggttgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13041163 |
acaataatgtaacatatttttaaaccgtgatgcataaaagaaatttaattgtggtctagtggtaaatataaagcaatcatttaacaaacttgaggttgta |
13041064 |
T |
|
| Q |
201 |
gcttaaatactgtcatatttcgcacgtaaatattttccaagatcaggtcatctgtg |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13041063 |
gcttaaatactgtcatatttcgcacgtaaatattttccaagatcaggtcatctgtg |
13041008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 28376866 - 28376951
Alignment:
| Q |
6 |
ggtcgcattcgtgtagcaacatggactggcccaagaacctcagcaggacgtcgaagcattcctgaaacataataaaggaaccataa |
91 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||| |||| ||||||| |
|
|
| T |
28376866 |
ggtcgcattcttgtagcaacatggacttgcccaagaacctcagctggacgtcgaagcactcctgaatcataatgaagggaccataa |
28376951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University