View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15822_low_14 (Length: 260)
Name: NF15822_low_14
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15822_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 21371440 - 21371195
Alignment:
| Q |
1 |
atccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttgaaaactttcgatttgtgttcagaatcaactggtaatgcaaatttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21371440 |
atccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttgaaaactttggatttgtgttcagaatcaactggtaatgcaaatttgg |
21371341 |
T |
|
| Q |
101 |
ctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttctcttccagttactccatgcatggagcttcctggtgaaccctcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21371340 |
ctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttctcttccagttactccatgcatggagcttcctggtgaaccctcaat |
21371241 |
T |
|
| Q |
201 |
atcagccattgttatagctgtttttagtaatgagaggggtgtaaat |
246 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21371240 |
atcagccattgatatagctgtttttagtaatgagaggggtgtaaat |
21371195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 21386117 - 21386362
Alignment:
| Q |
1 |
atccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttgaaaactttcgatttgtgttcagaatcaactggtaatgcaaatttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21386117 |
atccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttgaaaactttggatttgtgttcagaatcaactggtaatgcaaatttgg |
21386216 |
T |
|
| Q |
101 |
ctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttctcttccagttactccatgcatggagcttcctggtgaaccctcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21386217 |
ctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttctcttccagttactccatgcatggagcttcctggtgaaccctcaat |
21386316 |
T |
|
| Q |
201 |
atcagccattgttatagctgtttttagtaatgagaggggtgtaaat |
246 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21386317 |
atcagccattgatatagctgtttttagtaatgagaggggtgtaaat |
21386362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University