View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15822_low_17 (Length: 237)

Name: NF15822_low_17
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15822_low_17
NF15822_low_17
[»] chr2 (3 HSPs)
chr2 (1-185)||(832238-832422)
chr2 (181-221)||(832477-832517)
chr2 (181-217)||(41573753-41573789)
[»] chr7 (3 HSPs)
chr7 (181-212)||(29932064-29932095)
chr7 (181-217)||(3374755-3374791)
chr7 (181-213)||(20277051-20277083)
[»] chr8 (1 HSPs)
chr8 (181-213)||(29345805-29345837)
[»] chr6 (1 HSPs)
chr6 (125-157)||(11654881-11654913)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 832238 - 832422
Alignment:
Q  1 aatgttacttgtgtatattttttgtaacatttttctttcatcattggtaacagtagaaaaaatgtcacctatttcttctnnnnnnntatgtcacctattt 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||||    
T  832238 aatgttacttatgtatattttttgtaacatttttctttcatcattggtaacagtagaaaaaatgtcacctatttcctctaaaaaaatatgtcacctattt 832337  T
Q  101 atatcttttgcgacatgtcgtgcatttataacttttgcttagactttatttaaatttgataaaaaataactagtcaaaaattgaa 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  832338 atatcttttgcgacatgtcgtgcatttataacttttgcttagactttatttaaatttgataaaaaataactagtcaaaaattgaa 832422  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 832477 - 832517
Alignment:
Q  181 ttgaaattggatttcataatggaaatgaactatacaaacac 221  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  832477 ttgaaattggatttcataatggaaataaactatacaaacac 832517  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 41573753 - 41573789
Alignment:
Q  181 ttgaaattggatttcataatggaaatgaactatacaa 217  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  41573753 ttgaaatttgatttcataatggaaataaactatacaa 41573789  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 212
Target Start/End: Complemental strand, 29932095 - 29932064
Alignment:
Q  181 ttgaaattggatttcataatggaaatgaacta 212  Q
    ||||||||||||||||||||||||||||||||    
T  29932095 ttgaaattggatttcataatggaaatgaacta 29932064  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 3374755 - 3374791
Alignment:
Q  181 ttgaaattggatttcataatggaaatgaactatacaa 217  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  3374755 ttgaaatttgatttcataatggaaatgacctatacaa 3374791  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 20277083 - 20277051
Alignment:
Q  181 ttgaaattggatttcataatggaaatgaactat 213  Q
    |||||||| ||||||||||||||||||||||||    
T  20277083 ttgaaatttgatttcataatggaaatgaactat 20277051  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 29345805 - 29345837
Alignment:
Q  181 ttgaaattggatttcataatggaaatgaactat 213  Q
    |||||||| ||||||||||||||||||||||||    
T  29345805 ttgaaatttgatttcataatggaaatgaactat 29345837  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 11654913 - 11654881
Alignment:
Q  125 tttataacttttgcttagactttatttaaattt 157  Q
    |||||||||||||||||||||||||||| ||||    
T  11654913 tttataacttttgcttagactttatttagattt 11654881  T

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