View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15822_low_18 (Length: 236)
Name: NF15822_low_18
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15822_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 10233780 - 10233979
Alignment:
| Q |
19 |
atcactaagaatcataacacgaaaggaatttaagttggttgaaaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgta |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10233780 |
atcacaaagaatcataacacgaaaggaatttaagttggttgaaaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgta |
10233879 |
T |
|
| Q |
119 |
attaaaccttatatctttcatagtgaaattgacttgaagttttttcccttcatttagttgacagtaacccatgtcctgaacaactccaatgacatctaca |
218 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10233880 |
actaaaccttatatctttcatagtgaaattgacttgaagctttttcccttcatttagttgacagtaacccatgtcctgaacaactccaatgacatctaca |
10233979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 8336664 - 8336863
Alignment:
| Q |
19 |
atcactaagaatcataacacgaaaggaatttaagttggttgaaaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8336664 |
atcactaagaatcataacacgaaaggaatttaagttggttgaaaactgtaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgta |
8336763 |
T |
|
| Q |
119 |
attaaaccttatatctttcatagtgaaattgacttgaagttttttcccttcatttagttgacagtaacccatgtcctgaacaactccaatgacatctaca |
218 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8336764 |
actaaaccttatatctttcatagtgaaattgacttgaagctttttcccttcatttagttgacagtaacccatgtcctgaacaactccaatgacatctaca |
8336863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 22080835 - 22080888
Alignment:
| Q |
162 |
ttcccttcatttagttgacagtaacccatgtcctgaacaactccaatgacatct |
215 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||||| || | ||||||||||||| |
|
|
| T |
22080835 |
ttcccttcattcaattgacagtagcccatgtcctggaccattccaatgacatct |
22080888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University