View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15822_low_2 (Length: 479)
Name: NF15822_low_2
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15822_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 45162284 - 45161824
Alignment:
| Q |
1 |
gacaaaccaagaattgcactgtagttcatacattagagccttacgatatcttttgattgatcttattatgcaaacttccatgcttaattggtttggacca |
100 |
Q |
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| T |
45162284 |
gacaaaccaagaattgcactgtagttcatacattagagccttacgatatcttttgattgatcttattatgcaaacttccatgcttaattggtttggacca |
45162185 |
T |
|
| Q |
101 |
cattgtacaacatgataacaacttgcatacagagcctatatgcctataatgaagatagatatgtacgatcttaagaaagtgatattaatacgatttacaa |
200 |
Q |
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| T |
45162184 |
cattgtacaacatgataacaacttgcatacagagcgtatatgcctataatgaagatagatctgtacgatcttgagaaagtgatattaatacgatttacaa |
45162085 |
T |
|
| Q |
201 |
agttcaaacaaaattaatttggctttttattttcacaaaaacgcgtcctcttcattagagaacaaaagcagtacggttgtatacgaattctgccatagaa |
300 |
Q |
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| T |
45162084 |
agttcaaacaaaattaatttggctttttattttcacaaaaacgcgtcttcttcattagagaacaaaagcagtacggttgtatacgaattctgccatagaa |
45161985 |
T |
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| Q |
301 |
ttcatgtatgtccnnnnnnntggctgcatcagcaatgaaaatgatgcaagtcattttaatcagcaacatcaaagaattccttatcgtaaaacaaaaactc |
400 |
Q |
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| T |
45161984 |
ttcatgtatgtccaaaaaaatggctgcatcagcaatgaaaatgatgcaagtcattttaatcagcaacatcaaagaattccttatcgtaaaacaaaaactc |
45161885 |
T |
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| Q |
401 |
aacgttgtcctagctacttacgtgaagagattctatatatctatacttacatgtataatat |
461 |
Q |
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| T |
45161884 |
aacgttgtcctagctacttacgtgaagagattctatatatctatacttacatgtataatat |
45161824 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 16051859 - 16051896
Alignment:
| Q |
109 |
aacatgataacaacttgcatacagagcctatatgccta |
146 |
Q |
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| T |
16051859 |
aacatgataacaacttgcatacagagcctataagccta |
16051896 |
T |
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