View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15822_low_20 (Length: 231)
Name: NF15822_low_20
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15822_low_20 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 43940018 - 43939794
Alignment:
| Q |
7 |
gagttagcagagtatgttgatgatgatgagaagaaatggagggttaaagctgagaataagagttctggtgaagttgaggagtattctgcaaggttcttgg |
106 |
Q |
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| T |
43940018 |
gagttagcagagtatgttgatgatgatgagaagaaatggagggttaaagctgagaataagagttctggtgaagttgaggagtattctgcaaggttcttgg |
43939919 |
T |
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| Q |
107 |
ttgttgctagtggtgaaacagctgaacctcgtgtacctgtggttgaagggttggagaatttcaaagggaaagtaattcattcaactaggtacaaaaatgg |
206 |
Q |
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| T |
43939918 |
ttgttgctagtggtgaaacagctgaacctcgtgtacctgtggttgaagggttggagaatttcaaagggaaagtaattcattcaactaggtacaaaaatgg |
43939819 |
T |
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| Q |
207 |
aaaagagtttaaagatgaacatgtt |
231 |
Q |
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| T |
43939818 |
aaaagagtttaaagatgaacatgtt |
43939794 |
T |
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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 231
Target Start/End: Complemental strand, 43928078 - 43927885
Alignment:
| Q |
38 |
agaaatggagggttaaagctgagaataagagttctggtgaagttgaggagtattctgcaaggttcttggttgttgctagtggtgaaacagctgaacctcg |
137 |
Q |
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| T |
43928078 |
agaaatggaaggtgaaggctaagaataaggaatctggtgaggttgaggaatatgaaggaaggtttttggttgtagctagtggtgaaactagtgacccttt |
43927979 |
T |
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| Q |
138 |
tgtacctgtggttgaagggttggagaatttcaaagggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaagatgaacatgtt |
231 |
Q |
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| T |
43927978 |
tgtacctgaaattgatgggttgaagagttttactgggaaagtgattcattcaactgggtttaagaatgggaaagagtttaaagatgaacatgtt |
43927885 |
T |
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