View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15822_low_4 (Length: 448)
Name: NF15822_low_4
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15822_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 13246065 - 13245934
Alignment:
| Q |
26 |
tgttgaatatggcgaagaagaagagaaacgagtgacgttgaatgactcggctcagatggataatcttaatgaagactatgaaaggatacaattggtgatg |
125 |
Q |
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| T |
13246065 |
tgttgaatatggcgaagaagaagagaaacgagtgacgttgaatgactcggctcagatggataatcttaatgaagactatgaaaggatacaattggtgatg |
13245966 |
T |
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| Q |
126 |
aatgagttggttaaattggaaattcagttggc |
157 |
Q |
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| T |
13245965 |
aatgagttggttaaattggaaattcagttggc |
13245934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 13245875 - 13245811
Alignment:
| Q |
165 |
gcaagaattgatctcgaggatcgaatgaagtatatacggagttttatgcggatttatctcaagtc |
229 |
Q |
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| T |
13245875 |
gcaagcattgatctcgaggatcgaatgaagtatatacggagttttatgcggatttatctcaagtc |
13245811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 13245680 - 13245641
Alignment:
| Q |
230 |
gttttacgctggcctcaaataagaactcatcatattgtca |
269 |
Q |
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| T |
13245680 |
gttttacgttggcctcgaataagaactcatcatattgtca |
13245641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 342
Target Start/End: Original strand, 6829518 - 6829550
Alignment:
| Q |
310 |
gtggcaccagtagttcttaatgaggttaacctg |
342 |
Q |
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| T |
6829518 |
gtggcaccagtagttcttaatgaggttaacctg |
6829550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 7308638 - 7308580
Alignment:
| Q |
171 |
attgatctcgaggatcgaatgaagtatatacggagttttatgcggatttatctcaagtc |
229 |
Q |
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| T |
7308638 |
attgatctggaggatcgaatgacgtatctccggagctttatacgaatttatctcaagtc |
7308580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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