View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15822_low_5 (Length: 374)

Name: NF15822_low_5
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15822_low_5
NF15822_low_5
[»] chr5 (1 HSPs)
chr5 (19-312)||(26416121-26416414)
[»] chr2 (1 HSPs)
chr2 (79-117)||(14432763-14432801)
[»] chr8 (1 HSPs)
chr8 (79-112)||(4347051-4347084)
[»] chr4 (1 HSPs)
chr4 (79-108)||(8462601-8462630)
[»] chr1 (1 HSPs)
chr1 (79-108)||(50818606-50818635)
[»] chr6 (1 HSPs)
chr6 (79-111)||(25435379-25435411)
[»] chr3 (1 HSPs)
chr3 (79-115)||(13496994-13497030)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 26416121 - 26416414
Alignment:
Q  19 atatctccctccctttttataaccacattttcgcactatagtttttaattagagctcagattaatatatttcattttgacttgttcaaaataaattagag 118  Q
    ||||||| |||||||||||||| |||||||||||||| || ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||     
T  26416121 atatctcactccctttttataagcacattttcgcactctaatttttaattagagttcaggttaatatatttcattttgacttattcaaaataaattagaa 26416220  T
Q  119 ccgaggtagcaattatgttcttatgaagtaatttaattaatacatattcaatttttctcatgcagtcaggacaaatacaattgtgtaacacaaagatgaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26416221 ccgaggtagcaattatgttcttatgaagtaatttaattaatacatattcaatttttctcatgcagtcaggacaaatacaattgtgtaacacaaagatgaa 26416320  T
Q  219 tatgaaaacacaagaatcaaaaagagagtaccctttacctgaaaaatcatctcttggtcatttaagcttagaccttgagcttaatttgacatgt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26416321 tatgaaaacacaagaatcaaaaagagagtaccctttacctgaaaaatcatctcttggtcatttaagcttagaccttgagcttaatttgacatgt 26416414  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 14432801 - 14432763
Alignment:
Q  79 ttaatatatttcattttgacttgttcaaaataaattaga 117  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  14432801 ttaatatatttcattttaacttgttcaaaaaaaattaga 14432763  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 4347084 - 4347051
Alignment:
Q  79 ttaatatatttcattttgacttgttcaaaataaa 112  Q
    ||||||||||||||||||||||||| ||||||||    
T  4347084 ttaatatatttcattttgacttgttgaaaataaa 4347051  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 108
Target Start/End: Original strand, 8462601 - 8462630
Alignment:
Q  79 ttaatatatttcattttgacttgttcaaaa 108  Q
    ||||||||||||||||||||||||||||||    
T  8462601 ttaatatatttcattttgacttgttcaaaa 8462630  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 108
Target Start/End: Original strand, 50818606 - 50818635
Alignment:
Q  79 ttaatatatttcattttgacttgttcaaaa 108  Q
    ||||||||||||||||||||||||||||||    
T  50818606 ttaatatatttcattttgacttgttcaaaa 50818635  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 25435379 - 25435411
Alignment:
Q  79 ttaatatatttcattttgacttgttcaaaataa 111  Q
    |||||||| ||||||||||||||||||||||||    
T  25435379 ttaatataattcattttgacttgttcaaaataa 25435411  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 13496994 - 13497030
Alignment:
Q  79 ttaatatatttcattttgacttgttcaaaataaatta 115  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  13496994 ttaatatatttcattttgacttgttaaaaaaaaatta 13497030  T

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