View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15822_low_7 (Length: 352)
Name: NF15822_low_7
Description: NF15822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15822_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 34747934 - 34748261
Alignment:
| Q |
10 |
tagcaaagggaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgagagacagtatacaaaaagagagtccaaatgctgaggt |
109 |
Q |
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| T |
34747934 |
tagcaaagagaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgagagacaatatacaaaaagagagtccaaatgctgaggt |
34748033 |
T |
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| Q |
110 |
tattctgttggagattgatcttagctctttttgttctgtacaaagattttgttctgattttttagctttagatcttccacttaatattctaatgtaagtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34748034 |
tattctgttggagattgatcttagctctttttgttctgtacaaagattttgttctgattttttagctttagatcttccacttaatattctaatgtaagtt |
34748133 |
T |
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| Q |
210 |
ttgtcatcatattgctccaccttttcattttataataattaacatagtgaaagaaaatgggaaaaagtaatgatattttatgatatgtacactaatggtt |
309 |
Q |
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| T |
34748134 |
ttgtcatcatattgctccaccttttcattttataataattaacatagtgaaagaaaatgggtaaaagtaatgatattttatgatatgtacactaatggtt |
34748233 |
T |
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| Q |
310 |
agaataaataaattttacagaaacaatg |
337 |
Q |
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| T |
34748234 |
agaataaataaattttacagaaacaatg |
34748261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 7970911 - 7970679
Alignment:
| Q |
10 |
tagcaaagggaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgagagacagtatacaaaaagagagtccaaatgctgaggt |
109 |
Q |
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| T |
7970911 |
tagcaaagagaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgaga--caatatacaaaaagagagtccaaatgctgaggt |
7970814 |
T |
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| Q |
110 |
tattctgttggagattgatcttagctctttttgttctgtacaaagattttgttctgattttttagctttagatcttccacttaatattctaatgtaagtt |
209 |
Q |
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|||||||||||| |||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7970813 |
tattctgttggaaattggtcttagctccttttcttctgtataaagattttgttctgattttttagctttagatcttccgcttaatattctaatgtaagtt |
7970714 |
T |
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| Q |
210 |
ttgtcatcatattgctccaccttttcattttataa |
244 |
Q |
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||||||||||||| || || |||||||||||||| |
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| T |
7970713 |
ctgtcatcatattgttctactttttcattttataa |
7970679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 236 - 337
Target Start/End: Complemental strand, 7970655 - 7970555
Alignment:
| Q |
236 |
attttataataattaacatagtgaaagaaaatgggaaaaagtaatgatattttatgatatgtacactaatggttagaataaataaattttacagaaacaa |
335 |
Q |
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||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
7970655 |
attttataataat-agcatagtgaaataaaatgggaaaaagtaatgatatttaatgatagggacactaatggttagaataaataaattttacagaaacaa |
7970557 |
T |
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| Q |
336 |
tg |
337 |
Q |
| |
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|| |
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| T |
7970556 |
tg |
7970555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 43689455 - 43689644
Alignment:
| Q |
19 |
gaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgagagacagtatacaaaaagagagtccaaatgctgaggttattctgtt |
118 |
Q |
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||||||| ||| ||||| ||||||| || ||| |||| ||||| |||||||||| ||| | || ||| | |||||||| |||||||||||||||| || |
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| T |
43689455 |
gaggagtaagagttgtggttggtgccagagacatgaaaaaggctatgaaagtgaaagaaaaaatccaagaggagagtccttatgctgaggttattctatt |
43689554 |
T |
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| Q |
119 |
ggagattgatcttagctctttttgttctgtacaaagattttgttctgattttttagctttagatcttccacttaatattctaatgtaagt |
208 |
Q |
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| T |
43689555 |
ggagattgatcttagctctcttgcttctgtacaaagattttgttcagagtttttagctttagaattgccccttaatattctcatgtaagt |
43689644 |
T |
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