View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_high_11 (Length: 482)
Name: NF15823_high_11
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 3640284 - 3640727
Alignment:
| Q |
18 |
ggtttggttagtgagggaatgatgttctttaaagctatgaaagatagttatggcattgtgccgcaaatgagtcattatggttgcatggttgatatgtatg |
117 |
Q |
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| T |
3640284 |
ggtttggttagtgagggaatgatgttctttaaagctatgagagatagttatggcattgtgccacaaatgagtcattatggttgcatggttgatatgtatg |
3640383 |
T |
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| Q |
118 |
gacgtgctggtttgtttgaggaagctgtggctttccttaaaggtatgcctgttgaagcggagggacctatttggagtgctcttcttcaggcttgtaaaat |
217 |
Q |
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| T |
3640384 |
gacgtgctagtttgtttgaggaagctgtggctttccttaaaggtatgcctgttgaagcggagggacctatttggagtgctcttcttcaggcttgtaaaac |
3640483 |
T |
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| Q |
218 |
tcatggtaatgaagagatgtctgaatggattaggggacaaatccatgataaaaatgttggcgttggtactcttgctttgttatccaatatttatgctagt |
317 |
Q |
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| T |
3640484 |
tcatggtaatgaagagatgtctgaatggattaggggacaaatccatgataaaaatgttggcgttggtactcttgctttgttatccaatatttatgctagt |
3640583 |
T |
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| Q |
318 |
tctgaaaggtgggatgatgctaataatgttcggaaaataatgagaggcactgggttgaagaaggtggctggattgagctgggttgagcctgaggttagat |
417 |
Q |
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| T |
3640584 |
tctgaaaggtgggatgatgctaataatgttcggaaaataatgagaggcactgggttgaagaaggtggctggattgagctgggttgagcctgaggttagat |
3640683 |
T |
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| Q |
418 |
tggattcaagtttatgtgcggcttagaggagattgaagaagttg |
461 |
Q |
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| T |
3640684 |
tggattcaagtttatgtgcggcttagaggagattgatgaagttg |
3640727 |
T |
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