View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15823_high_13 (Length: 466)

Name: NF15823_high_13
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15823_high_13
NF15823_high_13
[»] chr8 (10 HSPs)
chr8 (4-448)||(25391349-25391792)
chr8 (17-448)||(25358318-25358747)
chr8 (102-448)||(25677973-25678318)
chr8 (1-448)||(25617227-25617666)
chr8 (102-211)||(25494704-25494812)
chr8 (9-78)||(25678317-25678386)
chr8 (4-78)||(25494811-25494885)
chr8 (259-394)||(9229278-9229414)
chr8 (397-447)||(25494652-25494702)
chr8 (294-387)||(44300477-44300568)
[»] scaffold0466 (1 HSPs)
scaffold0466 (4-448)||(8028-8481)
[»] scaffold1041 (2 HSPs)
scaffold1041 (4-273)||(952-1220)
scaffold1041 (77-115)||(1221-1259)
[»] chr1 (2 HSPs)
chr1 (245-384)||(29360204-29360344)
chr1 (213-353)||(5716885-5717024)
[»] chr6 (4 HSPs)
chr6 (213-384)||(1094400-1094573)
chr6 (259-399)||(34249307-34249448)
chr6 (259-357)||(1090688-1090785)
chr6 (223-360)||(20728171-20728307)
[»] chr5 (3 HSPs)
chr5 (259-387)||(32743607-32743736)
chr5 (259-371)||(16098386-16098498)
chr5 (267-355)||(39777398-39777485)
[»] scaffold0009 (1 HSPs)
scaffold0009 (259-355)||(3228-3324)
[»] chr3 (1 HSPs)
chr3 (234-354)||(25079982-25080103)
[»] chr2 (1 HSPs)
chr2 (282-358)||(40709191-40709267)
[»] chr4 (1 HSPs)
chr4 (261-387)||(18982262-18982387)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 4 - 448
Target Start/End: Complemental strand, 25391792 - 25391349
Alignment:
Q  4 gcaagtcgctcatcaaattaccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatcgacaagaagtatacctttttgaat 103  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  25391792 gcaagtctctcatcaaaataccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatggacgagaagtatgcctttttgaat 25391693  T
Q  104 ggagtcctatagaaagaactatacattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaataggaa 203  Q
    ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  25391692 ggattcctatagaaataactatacattaagaaa-ccattgggatacaaagtaaaaagcgagagggaaacaatatattactgttggaaatattaataggaa 25391594  T
Q  204 atagatttgggaaagatagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccgg 303  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25391593 atagatttcggaaagatagaagagagatgttgtgccgtggaaaaagtcactaaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccgg 25391494  T
Q  304 ttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgcccagaataatcgagaatag 403  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25391493 ttttgctccccaaggtttacacaactatgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgcccaaaataatcgagaatag 25391394  T
Q  404 aatataaaataatgaacttgatttttgacaacttatctgctcccc 448  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  25391393 aatataaaacaatgaacttgatttttgacaacttatctgctcccc 25391349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 25358747 - 25358318
Alignment:
Q  17 caaattaccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatcgacaagaagtatacctttttgaatggagtcctataga 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| |||||||||    
T  25358747 caaaataccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatggacgagaagtatgcctttttgaatggattcctataga 25358648  T
Q  117 aagaactatacattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaataggaaatagatttgggaa 216  Q
    |||| || |||||||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  25358647 aaga-ctgtacattaagaaa-ccattgggatacaaagtaaaaagcgagaggtaaacaatatattactgttggaaatattaataggaaatagattttggaa 25358550  T
Q  217 agatagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaa 316  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25358549 agatagaagagagatgttgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaa 25358450  T
Q  317 ggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgcccagaataatcgagaatagaatataaaataat 416  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  25358449 ggtttacacaactatgtatctgaactcgtgcactcgagaccagcactttggagcttcataaacaatgcccaaaataatcgagaatagaatataaaacaat 25358350  T
Q  417 gaacttgatttttgacaacttatctgctcccc 448  Q
    |||||||||||||||||||||||||| |||||    
T  25358349 gaacttgatttttgacaacttatctgatcccc 25358318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 102 - 448
Target Start/End: Complemental strand, 25678318 - 25677973
Alignment:
Q  102 atggagtcctatagaaagaactatacattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaatagg 201  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25678318 atggattcctatagaaagaattatacattaagaaa-ccattgggatacaaagtaaaaagcgagagggaaacaagatattactgttggaaatattaatagg 25678220  T
Q  202 aaatagatttgggaaagatagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatcc 301  Q
    |||||||||| |||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25678219 aaatagatttcggaaagatagaagagagatgttgtgtcgtggaaaaagccactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatcc 25678120  T
Q  302 ggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgcccagaataatcgagaat 401  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||| |||||| ||||||    
T  25678119 ggttttgctttccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcatgttggagcttcacaaacaatgcccaaaataattgagaat 25678020  T
Q  402 agaatataaaataatgaacttgatttttgacaacttatctgctcccc 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25678019 agaatataaaataatgaacttgatttttgacaacttatctgctcccc 25677973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 25617666 - 25617227
Alignment:
Q  1 tttgcaagtcgctcatcaaatt-accgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatcgacaagaagtataccttttt 99  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||    
T  25617666 tttgcaagtcgctcatcaaatttaccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatgggcgagaagtatgccttttt 25617567  T
Q  100 gaatggagtcctatagaaagaactatacattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaata 199  Q
    ||||| ||||            |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  25617566 gaatgcagtc------------ctatacattaag-aaaccatagggatacaaagtaaaaagtgagagggaaacaagatattagcgttggaaatattaata 25617480  T
Q  200 ggaaatagatt---------tgggaaagatagaa---gagagatgatgtgccgtg-gaaaaagtcactgaaatgaaagcaaattttcggtggacctccgg 286  Q
    |||||||||||         | ||||||||||||    |||| || |||||||||  ||||||  ||| | |||||||||||||| ||||||||||||||    
T  25617479 ggaaatagatttcggatagataggaaagatagaatattagagttgttgtgccgtgacaaaaagcaactcacatgaaagcaaatttccggtggacctccgg 25617380  T
Q  287 tgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgccc 386  Q
    |||||||||||||| | |||||||| | || |||||||||||||||         ||||||||||||||| | ||| ||||||||||| |||||||||||    
T  25617379 tgcaatccaatatctgattttgctctctaaagtttacacaactacg---------tcgtgcactcgaggctaacacgttggagcttcacaaacaatgccc 25617289  T
Q  387 agaataatcgagaatagaatataaaataatgaacttgatttttgacaacttatctgctcccc 448  Q
    |  ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25617288 aacataattgagaataaaatataaaataatgaacttgatttttgacaacttatctgctcccc 25617227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 25494812 - 25494704
Alignment:
Q  102 atggagtcctatagaaagaactatacattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaatagg 201  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  25494812 atggattcctatagaaagaattatacattaagaaa-ccattgggatacaaagtaaaaagcgagagggaaacaatatattactgttggaaatattaatagg 25494714  T
Q  202 aaatagattt 211  Q
    ||||||||||    
T  25494713 aaatagattt 25494704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 25678386 - 25678317
Alignment:
Q  9 tcgctcatcaaattaccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatat 78  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  25678386 tcgctcatcaaattaccgtaagaatagtactttcacaagttgaaaaacatgagttgagagctcctcatat 25678317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 25494885 - 25494811
Alignment:
Q  4 gcaagtcgctcatcaaattaccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatat 78  Q
    |||||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||    
T  25494885 gcaagtcgctcatcaaattaccataagaatagtaatctcacaaattgaaaaacatgagttgagagctcctcatat 25494811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 394
Target Start/End: Original strand, 9229278 - 9229414
Alignment:
Q  259 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcga-ggcc 357  Q
    |||||| ||||||||| | |||||| | ||||| ||||||||||||||||||| ||||||||||||||| | | | ||||||||||||||||  | |||     
T  9229278 tgaaagaaaattttcgatagacctcagatgcaacccaatatccggttttgctctccaaggtttacacaattgcatgtctgaactcgtgcacttaagggca 9229377  T
Q  358 agcactttggagcttcataaacaatgcccagaataat 394  Q
    | |||  |||||||||| |||||||| ||||||||||    
T  9229378 aacacaatggagcttcacaaacaatgtccagaataat 9229414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 397 - 447
Target Start/End: Complemental strand, 25494702 - 25494652
Alignment:
Q  397 agaatagaatataaaataatgaacttgatttttgacaacttatctgctccc 447  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25494702 agaatagaatataaaatgatgaacttgatttttgacaacttatctgctccc 25494652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 387
Target Start/End: Complemental strand, 44300568 - 44300477
Alignment:
Q  294 caatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgccca 387  Q
    |||||||| |||||||||||||||||||||||||||| |  |||||||||||  |||||| |||| ||| ||||||| ||| |||| |||||||    
T  44300568 caatatccagttttgctccccaaggtttacacaactagg--tctgaactcgtatactcgaagccaacacgttggagcctcacaaacgatgccca 44300477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 4 - 448
Target Start/End: Original strand, 8028 - 8481
Alignment:
Q  4 gcaagtcgctcatcaaattaccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatcgacaagaagtatacctttttgaat 103  Q
    ||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||    
T  8028 gcaagtcactcatcaaaataccataagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatggacaagaactatgcctttttgaat 8127  T
Q  104 ggagtcctatagaaagaactatacattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaataggaa 203  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8128 ggagtcctatagaaagaactatacatttag-aaaccattgggatacaaagtgaaaagtgagagggaaacaagatattactgttggaaatattaataggaa 8226  T
Q  204 atagatttgg--------gaaagatagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatcca 295  Q
    |||| || ||        |||||||||||||||| || || ||||||| |||||  ||||  |||||||||||||| |  |||||||| ||||||||  |    
T  8227 atag-ttcggatagatacgaaagatagaagagagttgttgcgccgtggcaaaagcaactgccatgaaagcaaatttccaatggacctctggtgcaattta 8325  T
Q  296 atatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagcactttggagcttcataaacaatgcccagaataatc 395  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||| ||||||| |||| ||||||     
T  8326 atatccggttttgctccccaatgtttacacaactacgtgtctgaactcgtgcacttgaggctagcacgttggagcttcacaaacaatacccaaaataatt 8425  T
Q  396 gagaatagaatataaaataatgaacttgatttttgacaac---ttatctgctcccc 448  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  8426 gagaatagaatataaaataatgaacttgatttttgacaactaattatctgctcccc 8481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 4 - 273
Target Start/End: Original strand, 952 - 1220
Alignment:
Q  4 gcaagtcgctcatcaaattaccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatcgacaagaagtatacctttttgaat 103  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||    
T  952 gcaagtcgctcatcaaaataccgtaagaatagtactctcacgagttgaaaaacacgagttgagagctcctcatatggacaagaagtgtgcctttttgaat 1051  T
Q  104 ggagtcctatagaaagaactatacattaagaaaaccattgggatacaaagtaaaaagtgagagggaaacaagatattactgttggaaatattaataggaa 203  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  1052 ggagtcctatagaaagaactatacatttag-aaaccattgggatacaaagtaaaaagcgagagggaaacaagatattactgttgaaaatattattaggaa 1150  T
Q  204 atagatttgggaaagatagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttc 273  Q
    |||||||| |||||||||||||||||||| ||  |||||||||||| |||||||||||||||||||||||    
T  1151 atagatttcggaaagatagaagagagatgttgcaccgtggaaaaagccactgaaatgaaagcaaattttc 1220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 1221 - 1259
Alignment:
Q  77 atcgacaagaagtatacctttttgaatggagtcctatag 115  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  1221 atcgacaagaagtatgcctttttgaatggagtcctatag 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 245 - 384
Target Start/End: Complemental strand, 29360344 - 29360204
Alignment:
Q  245 aaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcg 344  Q
    |||||||||||   ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||| ||| |||||| |||    
T  29360344 aaaagtcactgccttgaaagcaaattttcggtggacctccggtgcaacccaatatccgattttgctcctcaaggtttacacaactgcgtgtctgaattcg 29360245  T
Q  345 tgcactcgaggcc-agcactttggagcttcataaacaatgc 384  Q
    |||||| |||||| | |||  ||||||||||||||||||||    
T  29360244 tgcacttgaggccaaacacgatggagcttcataaacaatgc 29360204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 353
Target Start/End: Complemental strand, 5717024 - 5716885
Alignment:
Q  213 ggaaagatagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctcc 312  Q
    ||||||||||||||||| || |||||||||| ||||  |||||   |||| |||||||| ||||| || |||||||||| ||||  |||| |||||||||    
T  5717024 ggaaagatagaagagagttgttgtgccgtggtaaaaaccactgccctgaatgcaaatttccggtgtacttccggtgcaacccaa-gtccgattttgctcc 5716926  T
Q  313 ccaaggtttacacaactacgtatctgaactcgtgcactcga 353  Q
    ||||  ||||||||||| ||| ||| ||||| | |||||||    
T  5716925 ccaaaatttacacaactgcgtgtctaaactcatccactcga 5716885  T

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Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 213 - 384
Target Start/End: Original strand, 1094400 - 1094573
Alignment:
Q  213 ggaaagatagaagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccgg-tgcaatccaatatccggttttgctc 311  Q
    ||||||||||||||||| || |||||||||  |||||||||||   ||||||||||||||||||||| |||||| ||||| |||| ||||||||||||||    
T  1094400 ggaaagatagaagagagttgttgtgccgtgacaaaagtcactgtcctgaaagcaaattttcggtggatctccgggtgcaacccaa-atccggttttgctc 1094498  T
Q  312 cccaaggtttacacaactacgtatctgaactcgtgcactcgaggcc--agcactttggagcttcataaacaatgc 384  Q
    || ||||||||||||||| ||| | |||||||||||||||||||||  | |||  |||||||||| |||||||||    
T  1094499 cctaaggtttacacaactgcgtgtgtgaactcgtgcactcgaggcctgaacacgatggagcttcacaaacaatgc 1094573  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 259 - 399
Target Start/End: Complemental strand, 34249448 - 34249307
Alignment:
Q  259 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgag-gcc 357  Q
    |||||| ||||||||||||||||||| ||||||  || ||||| ||||||||||||||| |||||| |||| | | ||||||||||||||||||||  |     
T  34249448 tgaaagaaaattttcggtggacctccagtgcaactcattatccagttttgctccccaagatttacataactgcatgtctgaactcgtgcactcgagatca 34249349  T
Q  358 agcactttggagcttcataaacaatgcccagaataatcgaga 399  Q
    | |||  ||||||||||||||||||||||| |||||| ||||    
T  34249348 aacacgatggagcttcataaacaatgcccaaaataatagaga 34249307  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 259 - 357
Target Start/End: Original strand, 1090688 - 1090785
Alignment:
Q  259 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggcc 357  Q
    ||||||| |||||||| ||||||| | |||||| |||| |||||||||| ||||||||| ||||||||||||||| ||||||||||  |||||||||||    
T  1090688 tgaaagctaattttcgatggaccttcagtgcaacccaa-atccggttttactccccaagatttacacaactacgtgtctgaactcggacactcgaggcc 1090785  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 360
Target Start/End: Original strand, 20728171 - 20728307
Alignment:
Q  223 aagagagatgatgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggttta 322  Q
    ||||||| || |||||||||  |||||||||||   | ||||||||||| |||||||| ||||||| || | || || | ||||||||| ||||  ||||    
T  20728171 aagagagttgttgtgccgtgacaaaagtcactggtttaaaagcaaatttccggtggacttccggtgtaacctaaaattcagttttgctctccaaaattta 20728270  T
Q  323 cacaactacgtatctgaactcgtgcactcgaggccagc 360  Q
    ||||||||||| | |||| | |||||||||||||||||    
T  20728271 cacaactacgtgtttgaa-ttgtgcactcgaggccagc 20728307  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 387
Target Start/End: Original strand, 32743607 - 32743736
Alignment:
Q  259 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggcc- 357  Q
    ||||||||||||| ||||||||||||| ||||||| ||| ||| | ||||||||||||||||||||||||| | | ||||||||| |||||| ||||||     
T  32743607 tgaaagcaaatttccggtggacctccgatgcaatctaatttcctgatttgctccccaaggtttacacaactgcttgtctgaactcatgcacttgaggcca 32743706  T
Q  358 agcactttggagcttcataaacaatgccca 387  Q
    | |||  |||||||||| ||||||| ||||    
T  32743707 aacacgatggagcttcacaaacaataccca 32743736  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 371
Target Start/End: Original strand, 16098386 - 16098498
Alignment:
Q  259 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggcca 358  Q
    |||||||||| || ||||||| |||| ||||||| ||||| ||||||||||||  ||| |||||||||||||||| | ||||||||| ||||||||||||    
T  16098386 tgaaagcaaaattccggtggatctccagtgcaattcaataaccggttttgctcttcaaagtttacacaactacgtgtgtgaactcgttcactcgaggcca 16098485  T
Q  359 gcactttggagct 371  Q
     ||| ||||||||    
T  16098486 acacgttggagct 16098498  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 355
Target Start/End: Complemental strand, 39777485 - 39777398
Alignment:
Q  267 aattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgagg 355  Q
    ||||||||||||||||||||| ||| |||  ||||||||||||||||||| |||||||||||| ||| | |||||   |||||||||||    
T  39777485 aattttcggtggacctccggtacaacccag-atccggttttgctccccaaagtttacacaactgcgtgtttgaacctatgcactcgagg 39777398  T

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Target: scaffold0009 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 259 - 355
Target Start/End: Original strand, 3228 - 3324
Alignment:
Q  259 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgagg 355  Q
    |||||||||||||| |||| | |||||||||||| ||||||||| |||| |||| ||||||||| |||| | ||| ||||||| |||||||||||||    
T  3228 tgaaagcaaatttttggtgaaactccggtgcaattcaatatccgattttactcctcaaggtttatacaatttcgtgtctgaacccgtgcactcgagg 3324  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 234 - 354
Target Start/End: Original strand, 25079982 - 25080103
Alignment:
Q  234 tgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatcc-ggttttgctccccaaggtttacacaactacg 332  Q
    ||||| |||| ||||| |||||   ||||||||||||| || |||||||||||||||| |||||| || |||||| ||||  ||||||||||||| |  |    
T  25079982 tgtgcagtggcaaaagccactgctctgaaagcaaatttccgctggacctccggtgcaacccaatacccgggtttttctccgtaaggtttacacaattgtg 25080081  T
Q  333 tatctgaactcgtgcactcgag 354  Q
    | ||||||||||||||||||||    
T  25080082 tgtctgaactcgtgcactcgag 25080103  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 40709267 - 40709191
Alignment:
Q  282 tccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggcca 358  Q
    |||||||||| |||||||||||||||||||||||| |||||||  ||| | | ||||||| | ||||||||||||||    
T  40709267 tccggtgcaacccaatatccggttttgctccccaaagtttacattactgcatgtctgaacccatgcactcgaggcca 40709191  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 387
Target Start/End: Original strand, 18982262 - 18982387
Alignment:
Q  261 aaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactacgtatctgaactcgtgcactcgaggccagc 360  Q
    |||||||||||||| | |||||||| |  ||||| |||| || ||||||||| ||| | ||||  ||||| || ||||| | ||||||||||||| || |    
T  18982262 aaagcaaattttcgatagacctccgatataatcccatattcgattttgctcctcaaaggttacgtaactatgtgtctgacc-cgtgcactcgaggtcaac 18982360  T
Q  361 actttggagcttcataaacaatgccca 387  Q
    || ||||||||||| ||||||| ||||    
T  18982361 acattggagcttcacaaacaataccca 18982387  T

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