View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_high_14 (Length: 458)
Name: NF15823_high_14
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 446
Target Start/End: Original strand, 50505110 - 50505542
Alignment:
| Q |
11 |
cgaagaatatcatacgacactacttgctgagaacgtaactggtagtcattttggtacgtgcacattcaatacataaagcatgcaactctcaatgtaacaa |
110 |
Q |
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| T |
50505110 |
cgaaaaatatcatacgacactacttgctgagaacgtaactggtagtcattttggtacatgcacattcaatacataaagcatgcaactctcaaagtaacaa |
50505209 |
T |
|
| Q |
111 |
ttcatgctccaaccgtggaagctggagaacgagaaaaattagtcaaaaccatgcatataaaaaccaaagatctggtacaaaggttatccattcaaatcag |
210 |
Q |
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| T |
50505210 |
ttcatgctccaaccgtggaagctggagaacgagaaaaattagtcaaaaccatgcatataaaaaccaaagatctggtacaaaggttaaccattcaaatcag |
50505309 |
T |
|
| Q |
211 |
gttttccccgttcatcatcaactaattcagatgtcgaacttctttagcaaaaagggaaagttgttgaaaatgttcacactccaaataggacgagctcata |
310 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50505310 |
gttttccccgttcat---caactaattcagatgtcgaacttctttagcaaaaagggaaagttgttgaaaatgttcacattccaaataggacgagctcata |
50505406 |
T |
|
| Q |
311 |
tttaattgtgaacatcttatataggtataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacctcaaatcctgcaaaaatatttagta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505407 |
tttaattgtgaacatcttatataggtataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacctcaaatcctgcaaaaatatttagta |
50505506 |
T |
|
| Q |
411 |
taactaataggaataagcaaaggcattatctgataa |
446 |
Q |
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| T |
50505507 |
taactaataggaataagcaaaggcattatctgataa |
50505542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 399
Target Start/End: Complemental strand, 55281032 - 55280797
Alignment:
| Q |
154 |
caaaaccatgcatataaaaaccaaagatctggtacaaaggttatccattcaaatcaggttttccccgttcatcatcaactaattcagatgtcgaacttct |
253 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| || || || | || |||||| |
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| T |
55281032 |
caaaaccataaatataaaaagcaaagatctggtacaaaggttatccattcaaatcaggtttt-tctgttcatc----accgatacatgtttcaaacttca |
55280938 |
T |
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| Q |
254 |
ttagcaaaaagggaaagttgttgaaaatgttcacactccaaataggacgagctc-atatttaattgtgaacatcttatataggtataggcttgatcttga |
352 |
Q |
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||||| |||| ||||||||||| ||| || |||| | | || | ||| | ||| | | |||||| |||||||||| ||||||||||||||||| |
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| T |
55280937 |
ttagctaaaaaggaaagttgttcaaagagtgcacatttccaagaagacaaactcgaaaaataattgggaacatctta------tataggcttgatcttga |
55280844 |
T |
|
| Q |
353 |
agtgaagtgaaataagattgagaacaaagcacctcaaatcctgcaaa |
399 |
Q |
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| T |
55280843 |
agtgaagtgaaataagagagaagacaaagcacttcaaatcctgcaaa |
55280797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 230 - 446
Target Start/End: Complemental strand, 28733906 - 28733693
Alignment:
| Q |
230 |
aactaattcagatgtcgaacttctttagcaaaaagggaaagttgttgaaaatgttcacactccaaataggacgagctcatatttaattgtgaacatctta |
329 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||| |||||| |||| || ||||||||| |
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| T |
28733906 |
aactaattcagatgtcaaacttctttagcaaaaaggaaaagttgttgaaaatgttcacattcccagcaggacgaactcataattaacagtaaacatctta |
28733807 |
T |
|
| Q |
330 |
tataggtataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaataggaataagca |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||| |||| || |
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| T |
28733806 |
tataggtataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacttcaaatcctgcaaaaatgtt---tataattaataggcataaaca |
28733710 |
T |
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| Q |
430 |
aaggcattatctgataa |
446 |
Q |
| |
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||| ||||||||||||| |
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| T |
28733709 |
aagacattatctgataa |
28733693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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