View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_high_16 (Length: 448)
Name: NF15823_high_16
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_high_16 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 143232 - 142800
Alignment:
| Q |
1 |
tcaaatgcgggatttgtaacttagattccacaaatttaaaacatggtacacaacctaagcacaaaaaccagctcaaaattggtgtcttcttaaactttaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
143232 |
tcaaatgcgggatttgtaacttagattccacaaatttaaaacatggtacacaacctaagcacaaaaaccagctcaaaattggtgtcttcttaaactttaa |
143133 |
T |
|
| Q |
101 |
gtcacaatagcttctaccttgaagtttctcgaaactaatacctgcttcactcaactttgtagctgttcttagtacatattccgatctaaaaggtgcgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
143132 |
gtcacaatagcttctaccttgaagtttctcgaaactaataccagcttcactcaactttgtagctgttcttagtacatattccgatctaaaaggtgcgaaa |
143033 |
T |
|
| Q |
201 |
ctttttgatggattcacaccctttacttgaatttctcttggaagataagtatatctaatcaaatcagtgaaatggttgcaagatttgcaattttgagtca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
143032 |
ctttttgatggattcacaccctttacttgaatttctcttggaagataagtatatctaatcaaatcagtgaaatggttgcaagatttgcaattttgagtca |
142933 |
T |
|
| Q |
301 |
actccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaagcaagatcaataaaactaacacaattttccttattgctattgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142932 |
actccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaagcaagatcaataaaactaacacaattttccttattgctattgca |
142833 |
T |
|
| Q |
401 |
accattattttcaactaataacacccctctgtg |
433 |
Q |
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| T |
142832 |
accattattttcaactaataacacccctctgtg |
142800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 298616 - 298196
Alignment:
| Q |
1 |
tcaaatgcgggatttgtaacttagattccacaaatttaaaacatggtacacaacctaagcacaaaaaccagctcaaaattggtgtcttcttaaactttaa |
100 |
Q |
| |
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||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
298616 |
tcaaatgcgggatatgtaacttagattcgacaaattgaaaacatggtacacaacctcagcacaaaacccatctcaaaattgatgtcttcttaaactttaa |
298517 |
T |
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| Q |
101 |
gtcacaatagcttctaccttgaagtttctcgaaactaatacctgcttcactcaactttgtagctgttcttagtac-atattccgatctaaaaggtgcgaa |
199 |
Q |
| |
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||||||||||||||||||||||| |||||| || |||||||||||||| |||||||||||||||||||||||||| |||||| |||| |||||||| || |
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| T |
298516 |
gtcacaatagcttctaccttgaactttctcaaagctaatacctgcttccctcaactttgtagctgttcttagtacaatattctgatcaaaaaggtgtgat |
298417 |
T |
|
| Q |
200 |
actttttgatggattcacaccctttacttgaatttctcttggaagataagtatatctaatcaaatcagtgaaatggttgcaagatttgcaattttgagtc |
299 |
Q |
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||||| ||||||| ||| ||| || |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| ||||| |
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| T |
298416 |
actttgtgatggactcataccattaacttgaatttctcttggaagataagtatatctaatcaaatcaatgaagtgtttgcaagatttgcaatttggagtc |
298317 |
T |
|
| Q |
300 |
aactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaagcaagatcaataaaactaacacaattttccttattgctattgc |
399 |
Q |
| |
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|||||||| |||| || |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
298316 |
aactccaagtttttac---ttaacttttgaggataataaacttcaaagtagttaaaagcaagatcaataaaactaacacaattttccttattgctattga |
298220 |
T |
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| Q |
400 |
aaccattattttcaactaataaca |
423 |
Q |
| |
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||||||| |||||| ||||||||| |
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| T |
298219 |
aaccattcttttcacctaataaca |
298196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 116 - 426
Target Start/End: Original strand, 45960562 - 45960869
Alignment:
| Q |
116 |
accttgaagtttctcgaaactaatacctgcttcactcaactttgtagctgttcttagtacatattccgatctaaaaggtgcgaaactttttgatggattc |
215 |
Q |
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|||||||| |||||| || |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||||| |
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| T |
45960562 |
accttgaactttctcaaatctaatatctgcttcactcaactttgtagctgttcttagtgcatattctgatctaaaaggtgtgaaactttgtgatggattc |
45960661 |
T |
|
| Q |
216 |
acaccctttacttgaatttctcttggaagataagtatatctaatcaaatcagtgaaatggttgcaagatttgcaattttgagtcaactccaatttttgac |
315 |
Q |
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| ||| || ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| || |
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| T |
45960662 |
ataccattaacttgaatttctcttggaagataagtatatctaatcaaatcagcgaagtgtttgcaagatttgcaattttgagtcaactccaattttttac |
45960761 |
T |
|
| Q |
316 |
ttattaacttttgaggataataatcttcaaagtatttaaaagcaagatcaataaaactaacacaattttccttattgctattgcaaccattattttcaac |
415 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | |
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| T |
45960762 |
---ttaacttttgaggataataatcttcaaagtagttaaaagcaagatcaataaaactaaggcaattttccttattgctattgcaaccattcttttcacc |
45960858 |
T |
|
| Q |
416 |
taataacaccc |
426 |
Q |
| |
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||||||||||| |
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| T |
45960859 |
taataacaccc |
45960869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 45958430 - 45958549
Alignment:
| Q |
1 |
tcaaatgcgggatttgtaacttagattccacaaatttaaaacatggtacacaacctaagcacaaaaaccagctcaaaattggtgtcttcttaaactttaa |
100 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45958430 |
tcaaatgcgggatttgtaacgtagattcaacaaatttaaaacctggtacacaacctaagcacaaaaaccagctcaaaattggtgtcttcttaaactttaa |
45958529 |
T |
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| Q |
101 |
gtcacaatagcttctacctt |
120 |
Q |
| |
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||||||||||| |||||||| |
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| T |
45958530 |
gtcacaatagcatctacctt |
45958549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 179
Target Start/End: Complemental strand, 25539486 - 25539350
Alignment:
| Q |
43 |
atggtacacaacctaagcacaaaaaccagctcaaaattggtgtcttcttaaactttaagtcacaatagcttctaccttgaagtttctcgaaactaatacc |
142 |
Q |
| |
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|||||| |||||||| ||||||||||||| | | |||||| || || |||||||||| || |||||||| |||||| | |||||| || |||||| | |
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| T |
25539486 |
atggtaaacaacctaggcacaaaaaccagttgagaattggggttttgttaaactttatttccaaatagcttttaccttatactttctcaaagctaatatc |
25539387 |
T |
|
| Q |
143 |
tgcttcactcaactttgtagctgttcttagtacatat |
179 |
Q |
| |
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|||||| |||||||||| || ||| ||||||||||| |
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| T |
25539386 |
cgcttcattcaactttgttgcagtttttagtacatat |
25539350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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