View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_high_19 (Length: 419)
Name: NF15823_high_19
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 39844185 - 39843814
Alignment:
| Q |
16 |
atcccaaccctatttaaaatgttcgatttaatcaataatttcaacttataggggtataaattccttggctgactgttcccgttgaatgttgatcatgttt |
115 |
Q |
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| T |
39844185 |
atcccaaccctatttaaaatgttcgatttaatcaataatttcaacttctaggggtataaattccttggctgactgttcccgttgaatgttgatcatgttt |
39844086 |
T |
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| Q |
116 |
acttctattctagagaatccttcttccatattcaatatatttagaattctacccgatcggtattcacttttgacaccttgctaattcaagttgattttgg |
215 |
Q |
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| T |
39844085 |
acttctattctagagaatccttcttccatattcaatatatttagaattctacccgatcggtattcacttttgacaccttgctaattcaagttgattttgg |
39843986 |
T |
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| Q |
216 |
tgtctggtgatatatgatagaattctcccaatattctttttcccatttaccattaacattatttgttaatattacgggtgtgtttttgccaagttgaaga |
315 |
Q |
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| T |
39843985 |
tgtctggtgatatatgatagaattctcccaatattctttttcccatttaccataaacattatttgttaatattacgggtgtg--tttgccaagttgaaga |
39843888 |
T |
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| Q |
316 |
cttatattgacgagatattttgaaatcagactttttctactcattagattaggaatatgacacttgatactttc |
389 |
Q |
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| T |
39843887 |
cttatattgacgagaaattttgaaatcagactttttctactcattagattaggaatatgacacttgatactttc |
39843814 |
T |
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