View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15823_high_26 (Length: 370)
Name: NF15823_high_26
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_high_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 334
Target Start/End: Complemental strand, 17681957 - 17681639
Alignment:
| Q |
21 |
gcctgtcggagaagatcggagagtttctccactttggatttgatgtccacacattcttgcttgaacgggattgcctcctctgctgctttcgctactttgt |
120 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17681957 |
gcctgccgtagaagatcggagagtttctccactttggatctgatatccccacattcttgtttgaacgggattgccttctctgctgctttcgctactttgt |
17681858 |
T |
|
| Q |
121 |
cggccagctggatcaactttgctagtttttgtttcactacatcattgttttcacccatttgaatttgtt-----gatacaaagagtatattcaaatgcgt |
215 |
Q |
| |
|
|||||||||||| ||| |||||||| || |||||| || |||||||| ||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
17681857 |
cggccagctggaccaaatttgctagcattcgtttcaaagaataattgtttttacccatttgaatttgatttgatgatacaaagagtatattcaaatgcgt |
17681758 |
T |
|
| Q |
216 |
attctaattctcctactgcctaacacttcttcttttatcatcggattaagcttcaacggataaaacattcttagccacacatagctttactcagtctagt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
17681757 |
attctaattctcctactgcctaacacttcttcttttatcatcggattaagctgcaacggacaaaacattcttagccacacatagccttactcagtctaat |
17681658 |
T |
|
| Q |
316 |
caaaccgcgtactttgtcc |
334 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
17681657 |
caaaccgcgtactttgtcc |
17681639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University