View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15823_high_33 (Length: 337)

Name: NF15823_high_33
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15823_high_33
NF15823_high_33
[»] chr1 (3 HSPs)
chr1 (24-257)||(8300653-8300886)
chr1 (24-257)||(8297075-8297308)
chr1 (25-257)||(18279339-18279571)
[»] chr6 (1 HSPs)
chr6 (24-175)||(1145277-1145428)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 8300653 - 8300886
Alignment:
Q  24 atttcaactctgacactttttgagttcccttttaattccactctatccttcatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatc 123  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300653 atttcaactctgatactttctgagttcccttttaattccactctatcctccatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatc 8300752  T
Q  124 taacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtcaagactatccagattttctcccttcttctcgaattgtttctc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300753 taacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtcaagactatccagattttctcccttcttctcgaattgtttctc 8300852  T
Q  224 tttttccataaatttaattagctcagccaacaca 257  Q
    ||||||||||||||||||||||||||||||||||    
T  8300853 tttttccataaatttaattagctcagccaacaca 8300886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 8297075 - 8297308
Alignment:
Q  24 atttcaactctgacactttttgagttcccttttaattccactctatccttcatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatc 123  Q
    ||||||||||||| ||||| | |||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| | |||||||||| |||||    
T  8297075 atttcaactctgatactttctaagttcccttttaattccattctatcctccatagacttgatagactcgagaaaattcagcatcaagtttttgaaatatc 8297174  T
Q  124 taacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtcaagactatccagattttctcccttcttctcgaattgtttctc 223  Q
    ||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||| |    
T  8297175 taataaacaccaaagaattatccatcacagccaccttaattatcatccatttttcatccagattatccagattttctcccttcttctccaattgtttcgc 8297274  T
Q  224 tttttccataaatttaattagctcagccaacaca 257  Q
    ||||||||||||| || |||||||||||||||||    
T  8297275 tttttccataaatgtatttagctcagccaacaca 8297308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 18279571 - 18279339
Alignment:
Q  25 tttcaactctgacactttttgagttcccttttaattccactctatccttcatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatct 124  Q
    |||||||| ||||||||| | |||||||||||||||||| |||||||| || |||||| |||||||| |||||||||||||||||| ||||||||||||     
T  18279571 tttcaactttgacactttctaagttcccttttaattccattctatcctccaaagacttaatagactcgagaaaattcagcgtaaagcttttgatatatcc 18279472  T
Q  125 aacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtcaagactatccagattttctcccttcttctcgaattgtttctct 224  Q
    || | ||  ||||  |||||| |||    |||| || ||||||||||||| | | |||||| |||||||||||||  |||||||||| ||||| || |||    
T  18279471 aatatacgtcaaaatattatcaaactttgccacattgattatcatccattgtacatcaagattatccagattttcaaccttcttctccaattgattatct 18279372  T
Q  225 ttttccataaatttaattagctcagccaacaca 257  Q
    ||||||||||||||| |||||||||||||||||    
T  18279371 ttttccataaatttatttagctcagccaacaca 18279339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 1145277 - 1145428
Alignment:
Q  24 atttcaactctgacactttttgagttcccttttaattccactctatccttcatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatc 123  Q
    ||||||| ||||| ||||| | |||||||||||||||||| |||||||| || | ||||||||||||| ||||||||||| |||||| |||| |||  ||    
T  1145277 atttcaattctgatactttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttc 1145376  T
Q  124 taacaaacagcaaagaattatccaacacaaccaccttaattatcatccattt 175  Q
    ||||||||  ||||  |||||| |||  | |||| || ||||||||||||||    
T  1145377 taacaaacgtcaaaatattatcaaacttagccacattgattatcatccattt 1145428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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