View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_high_39 (Length: 259)
Name: NF15823_high_39
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_high_39 |
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| [»] scaffold0147 (3 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 7590 - 7780
Alignment:
| Q |
17 |
aatatctagataaaccggacttttaaggcgagaatagtagtgaagtgcttcttcgatgtctagtacgtgttcaagatcacctgaatccatcatatctaat |
116 |
Q |
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| T |
7590 |
aatatctagataaaccggacttttaaggcgagaatagtagtgaagtgcttcttcgatgtctagtacgtgttcaagatcacctgaatccatcatatctaat |
7689 |
T |
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| Q |
117 |
tccttcatcttctgtgctaacacatgtgctcccttattcatgttttgtgaattctattgcaaaaggggctaaatatgagaggggggacttt |
207 |
Q |
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| T |
7690 |
tccttcatcttctgtgctaacacatgtgctcccttattcatgttttgtgaattctattgcaaaaggggctaaatatgagaggggggacttt |
7780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 13174 - 13327
Alignment:
| Q |
17 |
aatatctagataaaccggacttttaaggcgagaatagtagtgaagtgcttcttcgatgtctagtacgtgttcaagatcacctgaatccatcatatctaat |
116 |
Q |
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| T |
13174 |
aatatcgagataaactggacttttaaggcgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctgattccatcatatccatt |
13273 |
T |
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| Q |
117 |
tccttcatcttctgtgctaacacatgtgctcccttattcatgttttgtgaattc |
170 |
Q |
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| T |
13274 |
ttcttcatcttctgtgctaacacatgtgctcccttattcgtgttttgtgaattc |
13327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 7794 - 7827
Alignment:
| Q |
226 |
aataggaggtcaaaatcgctacactttaaaagtt |
259 |
Q |
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| T |
7794 |
aataggaggtcaaaatcgctacactttgaaagtt |
7827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 43879189 - 43879078
Alignment:
| Q |
17 |
aatatctagataaaccggacttttaaggcgagaatagtagtgaagtgcttcttcgatgtctagtacgtgttcaagatcacctgaatccatcatatctaat |
116 |
Q |
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|||||||| ||||| ||||| || || |||||||| ||||||||||||||||| || |||||||| ||||||| |||||||||||| |||| || ||| |
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| T |
43879189 |
aatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaat |
43879090 |
T |
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| Q |
117 |
tccttcatcttc |
128 |
Q |
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| T |
43879089 |
tccttcatcttc |
43879078 |
T |
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