View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_high_41 (Length: 254)
Name: NF15823_high_41
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_high_41 |
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| [»] scaffold0466 (2 HSPs) |
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| [»] scaffold1041 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 25617758 - 25617938
Alignment:
| Q |
4 |
attggtagccttatgcttttttagaaggttgtcgagtttatgtgttctattcttttctctgtctttaatttctttatccattgcatcttttgtagctgct |
103 |
Q |
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| T |
25617758 |
attggtagccttatgcttttttagaagggtgtcgagtttatgtgctctattcttttctgtgtctttaatttctttatccactgcatcttttgtagctgct |
25617857 |
T |
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| Q |
104 |
tctaagtttgtgtatgcataatttgaaaagagacataataatgtggattatccattccctcatagatatctttaagtcatc |
184 |
Q |
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| T |
25617858 |
tctaagtttgtgtatgcataatttgaagagagacataataatgcgaagtatccattccctcatagatatctttaagtcatc |
25617938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 25391944 - 25392092
Alignment:
| Q |
88 |
atcttttgtagctgcttctaagtttgtgtatgcataatttgaaaagagacataa-taatgt--ggattatccattccctcatagatatctttaagtcatc |
184 |
Q |
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| T |
25391944 |
atcttttgtagctgcttctaagtttgtgtatgcataatttgaaaagagacataaataatgtatggattatccattccctcatagatatctttaagtcatc |
25392043 |
T |
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| Q |
185 |
gaggtgataagacctctgtgttgtcatagtggtatgaatactacatgtg |
233 |
Q |
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| T |
25392044 |
aaggtgataagagctctgtgttgtcatagtggtatgaatactacatgtg |
25392092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 25650413 - 25650544
Alignment:
| Q |
19 |
cttttttagaaggttgtcgagtttatgtgttctattcttttctctgtctttaatttctttatccattgc---------------atcttttgtagctgct |
103 |
Q |
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| T |
25650413 |
cttttttagaagggtgtcgagtttatgtgttctattcttttctatgtctttaatttctttatccattgcatctttttgtttcttatcttttgtagctgct |
25650512 |
T |
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| Q |
104 |
tctaagtttgtgtatgcataatttgaaaagag |
135 |
Q |
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| T |
25650513 |
tctaagtttgtgtatgcataatttgaagagag |
25650544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25391877 - 25391921
Alignment:
| Q |
1 |
gacattggtagccttatgcttttttagaaggttgtcgagtttatg |
45 |
Q |
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| T |
25391877 |
gacattggtagccttatgcttttttagaagggtgtcgagtttatg |
25391921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 25358745 - 25358773
Alignment:
| Q |
205 |
ttgtcatagtggtatgaatactacatgtg |
233 |
Q |
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| T |
25358745 |
ttgtcatagtggtatgaatactacatgtg |
25358773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 7916 - 7737
Alignment:
| Q |
1 |
gacattggtagccttatgcttttttagaaggttgtcgagtttatgtgttctattcttttctctgtctttaatttctttatccattgcatc---------- |
90 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7916 |
gacattggtagccttaggcttttttagaagggtgtcgagtttatgtgttctattcttttctgtgtctttaatttctttatccattgcatctttttgtttc |
7817 |
T |
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| Q |
91 |
-----ttttgtagctgcttctaagtttgtgtatgcataatttgaaaagagacataataatgtggattatccattccctca |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7816 |
ttatcttttgtagctgcttctaagtttgtgtatgcataatttgaagagagacataataatgtggattatccattccctca |
7737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 6708 - 6660
Alignment:
| Q |
185 |
gaggtgataagacctctgtgttgtcatagtggtatgaatactacatgtg |
233 |
Q |
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| T |
6708 |
gaggtgataagagctatgtgttgtcatagtgatatggatactacgtgtg |
6660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 867 - 811
Alignment:
| Q |
1 |
gacattggtagccttatgcttttttagaaggttgtcgagtttatgtgttctattctt |
57 |
Q |
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| T |
867 |
gacattggtagccttatgcttttttagaagggtgtcgagtttatgtgttctattctt |
811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 778 - 708
Alignment:
| Q |
132 |
agagacataataatgtggattatcc---------attccctcatagatatctttaagtcatcgaggtgata |
193 |
Q |
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| T |
778 |
agagacataataatgtggattatccatttcctcaatttcctcatagagatctttaagtcatcgaggtgata |
708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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