View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15823_high_42 (Length: 254)
Name: NF15823_high_42
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_high_42 |
 | |
|
| [»] scaffold2156 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
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Alignment Details
Target: scaffold2156 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold2156
Description:
Target: scaffold2156; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 506 - 282
Alignment:
| Q |
20 |
aaaacttgatctgcagttcaaacaattggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgatttt |
119 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
506 |
aaaacttgatatgcagttcaaataattggaaggtgagatgaatctttgtattctagaacttgagtttttgagttacttggatttgagctacaatgatttt |
407 |
T |
|
| Q |
120 |
gacgttataagagttccagtcactcaacacaacatcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcaca |
219 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
406 |
gacgttataagagttccaatcactcaacacaacatcacacgttcatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcaca |
307 |
T |
|
| Q |
220 |
tggataatcttcattggctttcttc |
244 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
306 |
tggataatcttcattggctttcttc |
282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 4824 - 5048
Alignment:
| Q |
20 |
aaaacttgatctgcagttcaaacaattggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgatttt |
119 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4824 |
aaaacttgatatgcagttcaaaaaattggaaggtgagatgaatctttgtattctagaacttgagtttttgagttacttggatttgagctacaatgatttt |
4923 |
T |
|
| Q |
120 |
gacgttataagagttccagtcactcaacacaacatcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcaca |
219 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4924 |
gacgttataagagttccaatcactcaacacaacatcacacgttcatctaaacttgtctaccttgacttagcccccctcatttttgataaaactcttcaca |
5023 |
T |
|
| Q |
220 |
tggataatcttcattggctttcttc |
244 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5024 |
tggataatcttcattggctttcttc |
5048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 242
Target Start/End: Original strand, 17941193 - 17941390
Alignment:
| Q |
45 |
ttggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactc |
144 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| || | ||||| ||||||||||| | ||| | ||||| || |||||| ||||| || || |
|
|
| T |
17941193 |
ttggaaggtgagatgaatctttgtattcttgaacttgagtttctcagttatttggatttgagtgataataaatttgatgtgataagaattccatccattc |
17941292 |
T |
|
| Q |
145 |
aacacaacatcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttct |
242 |
Q |
| |
|
||||||||||||||| || |||||||||||| ||||| |||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17941293 |
aacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttcacatggataatcttcattggctttct |
17941390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 19392586 - 19392732
Alignment:
| Q |
45 |
ttggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactc |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || | |||||||||||||||||| |||||||||||||| |||||| |||||| || || |
|
|
| T |
19392586 |
ttggaaggtgagatgaatctttgtattctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattc |
19392685 |
T |
|
| Q |
145 |
aacacaacatcacacgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
||| ||||||||| | || ||||||||||| |||||||||||||||| |
|
|
| T |
19392686 |
aacgcaacatcacgcattcatctaaacttgcctaccttgacttatcc |
19392732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 25462474 - 25462693
Alignment:
| Q |
20 |
aaaacttgatctgcagttcaaacaattggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgatttt |
119 |
Q |
| |
|
|||||||||||| || | || ||||||||||||||||||||||| ||| |||||||||||||| || | |||||||||||||| || | ||||| ||| |
|
|
| T |
25462474 |
aaaacttgatctccactacagtcaattggaaggtgagatgaatctatgtgttctagaacttgagtttctcagttacttggatttaagtgataatgaattt |
25462573 |
T |
|
| Q |
120 |
gacgttataagagttccagtcactcaacacaacatcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcaca |
219 |
Q |
| |
|
|| | ||||| |||||| | ||||||||||||||||| || ||||||||||| ||| |||||||||||||| |||| | ||| |||||||||| |
|
|
| T |
25462574 |
aacatcataagtattccagcctttcaacacaacatcacacattcatctaaacttgactatcttgacttatccccgctcaccct---taacactcttcaca |
25462670 |
T |
|
| Q |
220 |
tggataatcttcattggctttct |
242 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25462671 |
tggataatcttcattggctttct |
25462693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 18115418 - 18115563
Alignment:
| Q |
49 |
aaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaaca |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| ||||||||||| || |||||| ||||| || |||||| |
|
|
| T |
18115418 |
aaggtgagatgaatctttgtattctagaacttgagtttctcagttacttggatttgagctcaaatgattttgatgtgataagatttccatccattcaaca |
18115517 |
T |
|
| Q |
149 |
caacatcacacgtttatctaaacttgtctaccttgacttatccccc |
194 |
Q |
| |
|
|||| |||||| || |||||| ||| || ||||||||||||||||| |
|
|
| T |
18115518 |
caacctcacacattcatctaaccttttccaccttgacttatccccc |
18115563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 18102892 - 18103037
Alignment:
| Q |
46 |
tggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactca |
145 |
Q |
| |
|
|||||||||| ||||||||||||||||| | ||||||| || | | ||||||||||||||||| ||| ||||||| || |||||| ||||| || ||| |
|
|
| T |
18102892 |
tggaaggtgatatgaatctttgtattcttggacttgagtttctcaattacttggatttgagctggaatcattttgatgtgataagaattccatccattca |
18102991 |
T |
|
| Q |
146 |
acacaacatcacacgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
18102992 |
acacaacatcacacattcatctaaacttgtctaccttgacttatcc |
18103037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 18143710 - 18143843
Alignment:
| Q |
58 |
tgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcac |
157 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||||||||||||| | |||||||||||| | |||||| ||||| || ||||||||||||||| |
|
|
| T |
18143710 |
tgaatctttgtattctagaacttgagtttcttagttacttggatttgagattcaatgattttgatatgataagaattccatccattcaacacaacatcac |
18143809 |
T |
|
| Q |
158 |
acgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
|| || ||||||||||||||||||||||||||| |
|
|
| T |
18143810 |
acattcctctaaacttgtctaccttgacttatcc |
18143843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 19460985 - 19461130
Alignment:
| Q |
49 |
aaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaaca |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| ||||| ||||| || |||||| ||||| || |||||| |
|
|
| T |
19460985 |
aaggtgagatgaatctttgtattctagaacttgagtttctcagttacttggatttgagtctgaatgaatttgatgtgataagatttccatccattcaaca |
19461084 |
T |
|
| Q |
149 |
caacatcacacgtttatctaaacttgtctaccttgacttatccccc |
194 |
Q |
| |
|
||||||||||| || |||||| ||| |||||||||||||||||||| |
|
|
| T |
19461085 |
caacatcacacattcatctaaccttttctaccttgacttatccccc |
19461130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 19436326 - 19436474
Alignment:
| Q |
42 |
caattggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtca |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||||| ||||||||||| || |||||| || || || |
|
|
| T |
19436326 |
caattggaaggtgagatgaatctttgtattctaaaacttgagtttcttagttacttggatttgagtgtgaatgattttgatgtgataagaatttcatcca |
19436425 |
T |
|
| Q |
142 |
ctcaacacaacatcacacgtttatctaaacttgtctaccttgacttatc |
190 |
Q |
| |
|
||||||||| ||||||| || |||||||||| |||||||||||||||| |
|
|
| T |
19436426 |
ttcaacacaatatcacacattcatctaaacttctctaccttgacttatc |
19436474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 198
Target Start/End: Original strand, 19333450 - 19333599
Alignment:
| Q |
49 |
aaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaaca |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| |||| |||||||| |||| | ||||| || || ||| |
|
|
| T |
19333450 |
aaggtgagatgaatctttgtattctagaacttgagtttctcagttacttggatttgagtctgaatgtatttgacgtgataataattccatccattccaca |
19333549 |
T |
|
| Q |
149 |
caacatcacacgtttatctaaacttgtctaccttgacttatcccccctca |
198 |
Q |
| |
|
||||||||||| || |||||||||||| |||||||||||||||| ||||| |
|
|
| T |
19333550 |
caacatcacacattcatctaaacttgtataccttgacttatccctcctca |
19333599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 239
Target Start/End: Complemental strand, 24493942 - 24493778
Alignment:
| Q |
72 |
ctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtttatctaaac |
171 |
Q |
| |
|
|||||||||||| || | ||||||||||| |||||| | || |||||||| | ||||| ||||| || |||| |||||||||||| || |||||||| |
|
|
| T |
24493942 |
ctagaacttgagtttcttagttacttggacttgagcgataacgattttgatttgataagtattccaaccattcaaaacaacatcacacattcatctaaac |
24493843 |
T |
|
| Q |
172 |
ttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctt |
239 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
24493842 |
ttgtctaccttgacttatcccccctcagctttggt---actcttcacatggataatcttcattggctt |
24493778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 197
Target Start/End: Original strand, 16676666 - 16676814
Alignment:
| Q |
49 |
aaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaaca |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||| ||||| |||||| | |||||| ||||| || |||||| |
|
|
| T |
16676666 |
aaggtgagatgaatctttgtattctagaacttgagtttctaatttacttggatttgagctggaatgaatttgacctaataagaattccatccattcaaca |
16676765 |
T |
|
| Q |
149 |
caacatcacacgtttatctaaacttgtctaccttgacttatcccccctc |
197 |
Q |
| |
|
||| |||||| | |||||| ||||||||||||||||||||| ||||| |
|
|
| T |
16676766 |
aaacctcacacatgcatctaaccttgtctaccttgacttatcctccctc |
16676814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 18164615 - 18164757
Alignment:
| Q |
49 |
aaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaaca |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | ||| ||||||||||||| ||||||||||| || |||||| || || | |||||| |
|
|
| T |
18164615 |
aaggtgagatgaatctttgtattctagaacttgagtttctcagtcacttggatttgagtcttaatgattttgatgtgataagaattacatcaattcaaca |
18164714 |
T |
|
| Q |
149 |
caacatcacacgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
|||| |||||| || |||||||||||||||||||||||||||| |
|
|
| T |
18164715 |
caacttcacacattcatctaaacttgtctaccttgacttatcc |
18164757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 19350855 - 19351004
Alignment:
| Q |
42 |
caattggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtca |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || | |||||||||| |||||| | ||| ||||||| || |||| ||||| || |
|
|
| T |
19350855 |
caattggaaggtgagatgaatctttgtattctagaacttgagtttctcagttacttgggtttgagtgagaatcattttgatgtgataactattccatcca |
19350954 |
T |
|
| Q |
142 |
ctcaacacaacatcacacgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
|||| | |||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
19350955 |
ttcaaaaaaacatcacacattcctctaaacttgtctaccttgacttatcc |
19351004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 14896966 - 14896795
Alignment:
| Q |
20 |
aaaacttgatctgcagttcaaacaattggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgatttt |
119 |
Q |
| |
|
|||||||||||| || || ||| | ||| |||||||||||| |||||||||||| ||||| ||| || | |||||||| |||||||| ||| ||||| |
|
|
| T |
14896966 |
aaaacttgatctccacttgaaagatttgaaaggtgagatgagtctttgtattctcgaactggagtttctcagttacttagatttgagtatgaatcatttt |
14896867 |
T |
|
| Q |
120 |
gacgttataagagttccagtcactcaacacaacatcacacgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
|| || ||||| ||||||||||||||||||||||||||| || ||||| ||| ||||||||||||||||| |
|
|
| T |
14896866 |
gatgtgataagtattccagtcactcaacacaacatcacacattcatctagccttttctaccttgacttatcc |
14896795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 18146254 - 18146425
Alignment:
| Q |
20 |
aaaacttgatctgcagttcaaacaattggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgatttt |
119 |
Q |
| |
|
|||||||||||| | | ||| |||||||||||||||||||||||||||||||| ||||||||| || | | ||||||||||||||| | ||| ||||| |
|
|
| T |
18146254 |
aaaacttgatctcaactacaatcaattggaaggtgagatgaatctttgtattcttgaacttgagtttcttaattacttggatttgagtgataattatttt |
18146353 |
T |
|
| Q |
120 |
gacgttataagagttccagtcactcaacacaacatcacacgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
|| | |||||| ||||| || ||||||||| ||||||| | ||||||| ||| | ||||||||||||||| |
|
|
| T |
18146354 |
gatatgataagaattccatccattcaacacaatatcacacatatatctaaccttttgtaccttgacttatcc |
18146425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 19375147 - 19375289
Alignment:
| Q |
49 |
aaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaaca |
148 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || | ||||||||||||||||| | |||||| |||||||| |||||| |||| || |||||| |
|
|
| T |
19375147 |
aaggtgagatgaatctttatattctagaacttgagtttctcagttacttggatttgagtttcaatgaatttgacgtgataagaattccgtccattcaaca |
19375246 |
T |
|
| Q |
149 |
caacatcacacgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
|||| |||||| || |||||| ||| | | ||||||||||||| |
|
|
| T |
19375247 |
caacttcacacattcatctaaccttttgttccttgacttatcc |
19375289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 19413655 - 19413797
Alignment:
| Q |
49 |
aaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaaca |
148 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| || | |||||||||||||||||| ||||| |||||| | |||||| ||||| | | |||| |
|
|
| T |
19413655 |
aaggggagatgaatctttgtattctagaacttgagtttctcagttacttggatttgagccacaattattttggtgagataagaattccaactattaaaca |
19413754 |
T |
|
| Q |
149 |
caacatcacacgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
||| ||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
19413755 |
caatatcacacattcatctaaacttgtttaccttgacttatcc |
19413797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 191
Target Start/End: Complemental strand, 17728231 - 17728085
Alignment:
| Q |
45 |
ttggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactc |
144 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| || | ||||||||||||||||||| |||| | ||||| | |||||| ||||| || || |
|
|
| T |
17728231 |
ttggaaggtgagatgaatctttgtattcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattc |
17728132 |
T |
|
| Q |
145 |
aacacaacatcacacgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
| |||||||||||||||| ||| || ||| | ||| |||||||||| |
|
|
| T |
17728131 |
atcacaacatcacacgttcatcgaaccttttgtacactgacttatcc |
17728085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 191
Target Start/End: Complemental strand, 19029460 - 19029314
Alignment:
| Q |
45 |
ttggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactc |
144 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| || | ||||||||||||||||||| |||| | ||||| | |||||| ||||| || || |
|
|
| T |
19029460 |
ttggaaggtgagatgaatctttgtattcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattc |
19029361 |
T |
|
| Q |
145 |
aacacaacatcacacgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
| |||||||||||||||| ||| || ||| | ||| |||||||||| |
|
|
| T |
19029360 |
atcacaacatcacacgttcatcgaaccttttgtacactgacttatcc |
19029314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 241
Target Start/End: Original strand, 18015559 - 18015745
Alignment:
| Q |
49 |
aaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaaca |
148 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| || | ||||||||||||||||| | |||||| ||||| || ||||| ||||| || |||| | |
|
|
| T |
18015559 |
aaggtgagatgaatttttgtattttagaacttgaatttcttagttacttggatttgagtttcaatgaatttgatgtgataagtattccatccattcaaaa |
18015658 |
T |
|
| Q |
149 |
caacatcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttc |
241 |
Q |
| |
|
||||||||||| || ||||| ||| |||||||||||||| ||||| || |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
18015659 |
caacatcacacattcctctaaccttttctaccttgacttacacccccccactttt------actcttcacatggataatctggattggctttc |
18015745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 18022254 - 18022403
Alignment:
| Q |
42 |
caattggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtca |
141 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| ||||||||| || | ||||| ||||||||||| | ||||| ||||| || |||||| ||||| | |
|
|
| T |
18022254 |
caattgaaaggtgagctgaatctttgtattcttgaacttgagtttcttagttatttggatttgagtcataatgaatttgatgtgataagaattccatcta |
18022353 |
T |
|
| Q |
142 |
ctcaacacaacatcacacgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
||||||||||||||||| | ||||||| || ||||||||||||||||| |
|
|
| T |
18022354 |
ttcaacacaacatcacacactcatctaaatttttctaccttgacttatcc |
18022403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 19399173 - 19399299
Alignment:
| Q |
49 |
aaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaaca |
148 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || | ||||||||||||||||| | ||||| ||| | || |||||| ||||| || |||||| |
|
|
| T |
19399173 |
aaggtgagatgaatctctgtattctagaacttgagtttctcagttacttggatttgagtgagaatgaatttcatgtgataagaattccatccattcaaca |
19399272 |
T |
|
| Q |
149 |
caacatcacacgtttatctaaacttgt |
175 |
Q |
| |
|
||| ||||||| || |||||||||||| |
|
|
| T |
19399273 |
caatatcacacattcatctaaacttgt |
19399299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 19419444 - 19419590
Alignment:
| Q |
45 |
ttggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactc |
144 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||| || | ||||||||||||||||| | ||| | ||| | || |||||| ||||| || || |
|
|
| T |
19419444 |
ttggaaggtgagatgaatctttgtatttttgaacttgagtttcttagttacttggatttgagtcataataaatttaatgtgataagaattccatccattc |
19419543 |
T |
|
| Q |
145 |
aacacaacatcacacgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
||||||||||||||| || |||||| ||||| | |||||||||||| |
|
|
| T |
19419544 |
aacacaacatcacacattcatctaaccttgtgaaacttgacttatcc |
19419590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 217
Target Start/End: Original strand, 18107905 - 18108072
Alignment:
| Q |
49 |
aaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaaca |
148 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| || | ||||| || |||||||||| ||||||||||| || |||||| ||||| || |||||| |
|
|
| T |
18107905 |
aaggtgagatgaatctttgtattcttgaccttgagtttctcagttatttagatttgagctggaatgattttgatgtcataagaattccatccattcaaca |
18108004 |
T |
|
| Q |
149 |
caacatcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttca |
217 |
Q |
| |
|
||| ||||||| || |||||| ||| ||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
18108005 |
caatatcacacattcatctaacctttcgcaccttgacttatcagccttt-tttttgataaaactcttca |
18108072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 192
Target Start/End: Original strand, 19380354 - 19380501
Alignment:
| Q |
45 |
ttggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactc |
144 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || || | ||||||||||||||||| | ||| ||||||| || |||||| ||||| || || |
|
|
| T |
19380354 |
ttggaaggtgagatgaatctttgtattcttgaacttaagtttcttagttacttggatttgagtgaaaataattttgatgtgataagaattccatccattc |
19380453 |
T |
|
| Q |
145 |
aacacaacatcacacgtttatctaaacttgtctaccttgacttatccc |
192 |
Q |
| |
|
|||| ||||| |||| || ||||| ||| | ||||||||||||||| |
|
|
| T |
19380454 |
aacaaaacattacacattcatctatccttttgcaccttgacttatccc |
19380501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 19424015 - 19424076
Alignment:
| Q |
22 |
aacttgatctgcagttcaaacaattggaaggtgagatgaatctttgtattctagaacttgag |
83 |
Q |
| |
|
|||||||||| | |||| |||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
19424015 |
aacttgatctcctcttcagacaattggaaggtgagatcaatctttgtattctcgaacttgag |
19424076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 19333626 - 19333663
Alignment:
| Q |
207 |
aaaactcttcacatggataatcttcattggctttcttc |
244 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
19333626 |
aaaactctgcacatggatagtcttcattggctttcttc |
19333663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 17949438 - 17949470
Alignment:
| Q |
210 |
actcttcacatggataatcttcattggctttct |
242 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
17949438 |
actctgcacatggataatcttcattggctttct |
17949470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 49 - 242
Target Start/End: Complemental strand, 13667421 - 13667228
Alignment:
| Q |
49 |
aaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaaca |
148 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || | || || ||||||||||| | ||||| ||||| || |||| | || || || |||||| |
|
|
| T |
13667421 |
aaggtaagatgaatctttgtattctagaacttaagtttctcagctatttggatttgagtcataatgaatttgatgtgataaaaatttcatccattcaaca |
13667322 |
T |
|
| Q |
149 |
caacatcacacgtttatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttct |
242 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||| || || ||||||||| | ||||||||| ||||||||||||||| ||||| |
|
|
| T |
13667321 |
caacatcacaaattcatctaaacttgtctaccttgacttatccgcctacaattttgataatattcttcacattgataatcttcattggttttct |
13667228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 8458934 - 8459080
Alignment:
| Q |
45 |
ttggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactc |
144 |
Q |
| |
|
||||||||| |||| ||||||| ||||||||||||||| || ||||||||||||||||||||| || | ||||| || |||||| ||||| | || |
|
|
| T |
8458934 |
ttggaaggtaagatcaatctttccattctagaacttgagtttctgagttacttggatttgagcttacataaatttgatgtgataagaattccatcgattc |
8459033 |
T |
|
| Q |
145 |
aacacaacatcacacgtttatctaaacttgtctaccttgacttatcc |
191 |
Q |
| |
|
||||||||||||||| | |||||| ||| | |||||||||||||| |
|
|
| T |
8459034 |
aacacaacatcacacatgcatctaaccttttgcaccttgacttatcc |
8459080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 15531809 - 15531873
Alignment:
| Q |
42 |
caattggaaggtgagatgaatctttgtattctagaacttgagcttttgagttacttggatttgag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| || | |||||||| |||||||| |
|
|
| T |
15531809 |
caattggaaggtgagatgaatctttgtattctaaaacttgagtttcttagttacttcgatttgag |
15531873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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