View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15823_high_46 (Length: 231)
Name: NF15823_high_46
Description: NF15823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15823_high_46 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37281669 - 37281450
Alignment:
| Q |
1 |
taagaaagtttattaattgcatttacaagtgataannnnnnnnngatgactaatgaacttgtgaacatgccaattttacgactgtatcaaaagttgaaaa |
100 |
Q |
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| T |
37281669 |
taagaaagtttattaattgcatttacaagtgataatttttttt-gatgactaatgaacttgtgaacatgccaattttacgactgtatcaaaagttgaaaa |
37281571 |
T |
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| Q |
101 |
gataaatataaattattcaagaataaattatacctccaattttacgtcccaatgttgttttttctacattttcaacaggcttggtatatattcaagcttc |
200 |
Q |
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| T |
37281570 |
gataaatataaattattcaagaataaattatacctccaattttacgtcccgatgttgttttttctacattttcaacaggcttggtatatattcaagcttc |
37281471 |
T |
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| Q |
201 |
catctcacgtcaacgttcatc |
221 |
Q |
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| T |
37281470 |
catctcacgtcaacgttcatc |
37281450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 37278735 - 37278656
Alignment:
| Q |
52 |
aatgaacttgtgaacatgccaattttacgactgtatcaaaagttgaaaagataaatataaatt--attcaagaataaatt |
129 |
Q |
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|||||| |||| ||||||||||||| || | |||||||| ||||||| |||||| |||||| ||||||||||||||| |
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| T |
37278735 |
aatgaatttgtaaacatgccaatttcacaagaatatcaaaaattgaaaaaataaatctaaatttaattcaagaataaatt |
37278656 |
T |
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